RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 RBM42Q9BTD8 480 aaKnown RBP6.12□□□□□ -1.43
SMAD4-202ENST00000398417 MCM10Q7L590 875 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 POLKQ9UBT6 870 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 ATAD2Q6PL18 1390 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 NPC1L1Q9UHC9 1359 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 HOMEZQ8IX15 550 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 C8orf58Q8NAV2 365 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 PHACTR3Q96KR7 559 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 TBC1D32Q96NH3 1257 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 ASXL1Q8IXJ9 1541 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 MCM4P33991 863 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 TSPYL4Q9UJ04 414 aa6.12□□□□□ -1.43
SMAD4-202ENST00000398417 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.11□□□□□ -1.433e-12■□□□□ 9.1
SMAD4-202ENST00000398417 STK11IPQ8N1F8 1099 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.11□□□□□ -1.43
SMAD4-202ENST00000398417 GCC1Q96CN9 775 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 CCDC27Q2M243 656 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 C16orf71Q8IYS4 520 aaPredicted RBP6.11□□□□□ -1.43
SMAD4-202ENST00000398417 STK31Q9BXU1 1019 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 KDM5CP41229 1560 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 ABCC2Q92887 1545 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 KDM5DQ9BY66 1539 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 EIF2S2P20042 333 aaKnown RBP6.11□□□□□ -1.43
SMAD4-202ENST00000398417 RILPL2Q969X0 211 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 A0A1W2PP64 1363 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 ANKRD36BQ8N2N9 1353 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 PTPRTO14522 1441 aa6.11□□□□□ -1.43
SMAD4-202ENST00000398417 CT47B1P0C2W7 299 aaPredicted RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 ZMYM4Q5VZL5 1548 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 SAMD9LQ8IVG5 1584 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 OS9Q13438 667 aaPredicted RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 SLC26A8Q96RN1 970 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 SLC4A2P04920 1241 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 USP19O94966 1318 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 AEBP1Q8IUX7 1158 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 PTMSP20962 102 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 SSFA2P28290 1259 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 FOXD4L6Q3SYB3 417 aaPredicted RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 FOXD4L3Q6VB84 417 aaPredicted RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 DDX49Q9Y6V7 483 aaKnown RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 TRIM6-TRIM34B2RNG4 842 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 WASLO00401 505 aaPredicted RBP6.1□□□□□ -1.43
SMAD4-202ENST00000398417 VAMP4O75379 141 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 CTTNBP2Q8WZ74 1663 aa6.1□□□□□ -1.43
SMAD4-202ENST00000398417 DDX11L8A8MPP1 907 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 F6X3S4 739 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 ALDH1L2Q3SY69 923 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 PLEKHF1Q96S99 279 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 ERCC6L2Q5T890 1561 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 ZNF428Q96B54 188 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 CEBPAP49715 358 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-202ENST00000398417 ZBTB40Q9NUA8 1239 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 UGGT1Q9NYU2 1555 aa6.09□□□□□ -1.43
SMAD4-202ENST00000398417 HDAC1Q13547 482 aaPredicted RBP6.09□□□□□ -1.43
SMAD4-202ENST00000398417 FOXO3O43524 673 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 HMMRO75330 724 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 MAP4K4O95819 1239 aaPredicted RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 MCTP1Q6DN14 999 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 ZBTB7BO15156 539 aaPredicted RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 NUCB1Q02818 461 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 FKBP5Q13451 457 aaPredicted RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 PODXL2Q9NZ53 605 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 HMGB1P09429 215 aaKnown RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 PUS7Q96PZ0 661 aaKnown RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 RSPH6AQ9H0K4 717 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 IFT57Q9NWB7 429 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 PRDM15P57071 1507 aaPredicted RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 NSD2O96028 1365 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 K7ELQ4 463 aaPredicted RBP6.08□□□□□ -1.44
SMAD4-202ENST00000398417 IL16Q14005 1332 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 ABCC11Q96J66 1382 aa6.08□□□□□ -1.44
SMAD4-202ENST00000398417 IL13P35225 146 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 PLCB2Q00722 1185 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 USHBP1Q8N6Y0 703 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 NLRP6P59044 892 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 ANO2Q9NQ90 1003 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 EID1Q9Y6B2 187 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 TNPO1Q92973 898 aaKnown RBP6.07□□□□□ -1.44
SMAD4-202ENST00000398417 ARHGEF5Q12774 1597 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 INTS3Q68E01 1043 aaKnown RBP6.07□□□□□ -1.44
SMAD4-202ENST00000398417 KIF21AQ7Z4S6 1674 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 PTMAP06454 111 aaKnown RBP6.07□□□□□ -1.44
SMAD4-202ENST00000398417 OTUD7AQ8TE49 926 aaPredicted RBP6.07□□□□□ -1.44
SMAD4-202ENST00000398417 SMC5Q8IY18 1101 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 FAM43AQ8N2R8 423 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 NPATQ14207 1427 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 NUTM1Q86Y26 1132 aa6.07□□□□□ -1.44
SMAD4-202ENST00000398417 MRE11P49959 708 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 TBC1D9Q6ZT07 1266 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 RPAP2Q8IXW5 612 aaPredicted RBP6.06□□□□□ -1.44
SMAD4-202ENST00000398417 RBM33Q96EV2 1170 aaKnown RBP6.06□□□□□ -1.44
SMAD4-202ENST00000398417 IL1RAPL2Q9NP60 686 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 EIF4A2Q14240 407 aaKnown RBP6.06□□□□□ -1.44
SMAD4-202ENST00000398417 MCCP23508 829 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 ZNF692Q9BU19 519 aaPredicted RBP6.06□□□□□ -1.44
SMAD4-202ENST00000398417 GCC2Q8IWJ2 1684 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 GAS2L2Q8NHY3 880 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 PRPF40AO75400 957 aaKnown RBP6.06□□□□□ -1.44
SMAD4-202ENST00000398417 HSP90AB2PQ58FF8 381 aa6.06□□□□□ -1.44
SMAD4-202ENST00000398417 TSHZ3Q63HK5 1081 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms