RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.49□□□□□ -0.41
COL4A6-203ENST00000394872 TCP11L2Q8N4U5 519 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 PATL2C9JE40 543 aaKnown RBP12.48□□□□□ -0.41
COL4A6-203ENST00000394872 CCDC158Q5M9N0 1113 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 AAMPQ13685 434 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 CASKIN1Q8WXD9 1431 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 PIP4K2BP78356 416 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 ERC1Q8IUD2 1116 aa12.48□□□□□ -0.41
COL4A6-203ENST00000394872 SPG7Q9UQ90 795 aa12.47□□□□□ -0.41
COL4A6-203ENST00000394872 TWISTNBQ3B726 338 aaPredicted RBP12.47□□□□□ -0.41
COL4A6-203ENST00000394872 ZFYVE27Q5T4F4 411 aa12.47□□□□□ -0.41
COL4A6-203ENST00000394872 HIP1O00291 1037 aa12.47□□□□□ -0.41
COL4A6-203ENST00000394872 ATP2B2Q01814 1243 aa12.47□□□□□ -0.41
COL4A6-203ENST00000394872 WWC2Q6AWC2 1192 aa12.47□□□□□ -0.41
COL4A6-203ENST00000394872 CDK5RAP3Q96JB5 506 aa12.46□□□□□ -0.41
COL4A6-203ENST00000394872 OFD1O75665 1012 aa12.46□□□□□ -0.41
COL4A6-203ENST00000394872 GNAI2P04899 355 aa12.46□□□□□ -0.42
COL4A6-203ENST00000394872 EXOSC9Q06265 439 aaKnown RBP12.46□□□□□ -0.42
COL4A6-203ENST00000394872 SULT6B1Q6IMI4 303 aa12.46□□□□□ -0.42
COL4A6-203ENST00000394872 ZNF428Q96B54 188 aa12.46□□□□□ -0.42
COL4A6-203ENST00000394872 PPP2R1AP30153 589 aa12.46□□□□□ -0.42
COL4A6-203ENST00000394872 HDGFL1Q5TGJ6 251 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 NAT10Q9H0A0 1025 aaKnown RBP12.45□□□□□ -0.42
COL4A6-203ENST00000394872 BRD4O60885 1362 aaPredicted RBP12.45□□□□□ -0.42
COL4A6-203ENST00000394872 ANKLE2Q86XL3 938 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 ZNF692Q9BU19 519 aaPredicted RBP12.45□□□□□ -0.42
COL4A6-203ENST00000394872 RSPH6AQ9H0K4 717 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 ATP2B1P20020 1258 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.45□□□□□ -0.42
COL4A6-203ENST00000394872 C1orf115Q9H7X2 142 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 KIF21BO75037 1637 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 ZNF530Q6P9A1 599 aaPredicted RBP12.45□□□□□ -0.42
COL4A6-203ENST00000394872 PDILTQ8N807 584 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 CABP1Q9NZU7 370 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 MYL6BP14649 208 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 SDF4Q9BRK5 362 aa12.45□□□□□ -0.42
COL4A6-203ENST00000394872 STK11IPQ8N1F8 1099 aa12.44□□□□□ -0.42
COL4A6-203ENST00000394872 SLC4A2P04920 1241 aa12.44□□□□□ -0.42
COL4A6-203ENST00000394872 RBM5P52756 815 aaKnown RBP eCLIP12.44□□□□□ -0.42
COL4A6-203ENST00000394872 PNISRQ8TF01 805 aaKnown RBP12.44□□□□□ -0.42
COL4A6-203ENST00000394872 HSP90AB2PQ58FF8 381 aa12.44□□□□□ -0.42
COL4A6-203ENST00000394872 RUFY1Q96T51 708 aa12.44□□□□□ -0.42
COL4A6-203ENST00000394872 SCAPERQ9BY12 1400 aa12.44□□□□□ -0.42
COL4A6-203ENST00000394872 SIL1Q9H173 461 aa12.43□□□□□ -0.42
COL4A6-203ENST00000394872 NOB1Q9ULX3 412 aaKnown RBP12.43□□□□□ -0.42
COL4A6-203ENST00000394872 RTEL1-TNFRSF6BF6WH68 1400 aa12.43□□□□□ -0.42
COL4A6-203ENST00000394872 IFT57Q9NWB7 429 aa12.43□□□□□ -0.42
COL4A6-203ENST00000394872 KRT18P05783 430 aaKnown RBP12.42□□□□□ -0.42
COL4A6-203ENST00000394872 TXLNAP40222 546 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 PLEKHH2Q8IVE3 1493 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 C9orf84Q5VXU9 1444 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 MPHOSPH8Q99549 860 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 MRC2Q9UBG0 1479 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 ZNF771Q7L3S4 317 aaPredicted RBP12.42□□□□□ -0.42
COL4A6-203ENST00000394872 SLC26A8Q96RN1 970 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 SLC12A5Q9H2X9 1139 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 PRDM11Q9NQV5 511 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 AK7Q96M32 723 aa12.42□□□□□ -0.42
COL4A6-203ENST00000394872 TEX35Q5T0J7 233 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 MNS1Q8NEH6 495 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 TSR2Q969E8 191 aaKnown RBP12.41□□□□□ -0.42
COL4A6-203ENST00000394872 POGZQ7Z3K3 1410 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 CCDC57Q2TAC2 916 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 NBPF1Q3BBV0 1214 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 CCT4P50991 539 aaKnown RBP12.41□□□□□ -0.42
COL4A6-203ENST00000394872 NACAP1Q9BZK3 213 aa12.41□□□□□ -0.42
COL4A6-203ENST00000394872 CDR1P51861 262 aa12.4□□□□□ -0.42
COL4A6-203ENST00000394872 MAGEC2Q9UBF1 373 aaPredicted RBP12.4□□□□□ -0.42
COL4A6-203ENST00000394872 XPCQ01831 940 aaPredicted RBP12.4□□□□□ -0.42
COL4A6-203ENST00000394872 HFM1A2PYH4 1435 aa12.4□□□□□ -0.42
COL4A6-203ENST00000394872 CFTRP13569 1480 aa12.4□□□□□ -0.42
COL4A6-203ENST00000394872 SLC52A1Q9NWF4 448 aa12.4□□□□□ -0.42
COL4A6-203ENST00000394872 CCDC173Q0VFZ6 552 aa12.4□□□□□ -0.42
COL4A6-203ENST00000394872 CAGE1Q8TC20 777 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 CDCA7LQ96GN5 454 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 BTBD11A6QL63 1104 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 NEK4P51957 841 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 TTLL5Q6EMB2 1281 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 GCC1Q96CN9 775 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 CCDC69A6NI79 296 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 RAPGEF3O95398 923 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 MAP4K4O95819 1239 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-203ENST00000394872 ZNF396Q96N95 335 aaPredicted RBP12.39□□□□□ -0.43
COL4A6-203ENST00000394872 SRCIN1Q9C0H9 1055 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 ERBINQ96RT1 1412 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 KINO60870 393 aaKnown RBP12.39□□□□□ -0.43
COL4A6-203ENST00000394872 NCAPD3P42695 1498 aa12.39□□□□□ -0.43
COL4A6-203ENST00000394872 IFT140Q96RY7 1462 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 BICDL1Q6ZP65 573 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 PAF1Q8N7H5 531 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 LRRCC1Q9C099 1032 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 ACBD3Q9H3P7 528 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 SYCP1Q15431 976 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 ARGLU1Q9NWB6 273 aaPredicted RBP12.38□□□□□ -0.43
COL4A6-203ENST00000394872 PDZRN3Q9UPQ7 1066 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 CEBPZQ03701 1054 aaKnown RBP12.38□□□□□ -0.43
COL4A6-203ENST00000394872 ZSCAN25Q6NSZ9 544 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 EHBP1L1Q8N3D4 1523 aa12.38□□□□□ -0.43
COL4A6-203ENST00000394872 RRS1Q15050 365 aaKnown RBP12.38□□□□□ -0.43
COL4A6-203ENST00000394872 FILIP1LQ4L180 1135 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms