RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 WDR4P57081 412 aaKnown RBP2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 FBLN7Q53RD9 439 aa2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 EHBP1Q8NDI1 1231 aa2.7□□□□□ -1.98
RNU6-540P-201ENST00000384622 SOS2Q07890 1332 aaPredicted RBP2.69□□□□□ -1.98
RNU6-540P-201ENST00000384622 KRTAP9-7A8MTY7 169 aa2.69□□□□□ -1.98
RNU6-540P-201ENST00000384622 DYRK3O43781 588 aa2.69□□□□□ -1.98
RNU6-540P-201ENST00000384622 TIMP2P16035 220 aa2.69□□□□□ -1.98
RNU6-540P-201ENST00000384622 FECHP22830 423 aa2.69□□□□□ -1.98
RNU6-540P-201ENST00000384622 FMNL1O95466 1100 aaPredicted RBP2.68□□□□□ -1.98
RNU6-540P-201ENST00000384622 ELNP15502 786 aa2.68□□□□□ -1.98
RNU6-540P-201ENST00000384622 NNTQ13423 1086 aa2.68□□□□□ -1.98
RNU6-540P-201ENST00000384622 LRRC4BQ9NT99 713 aa2.68□□□□□ -1.98
RNU6-540P-201ENST00000384622 RBM27Q9P2N5 1060 aaKnown RBP2.68□□□□□ -1.98
RNU6-540P-201ENST00000384622 ADH1CP00326 375 aa2.67□□□□□ -1.98
RNU6-540P-201ENST00000384622 THAP11Q96EK4 314 aa2.67□□□□□ -1.98
RNU6-540P-201ENST00000384622 DDX27Q96GQ7 796 aaKnown RBP2.67□□□□□ -1.98
RNU6-540P-201ENST00000384622 RRAGCQ9HB90 399 aa2.67□□□□□ -1.98
RNU6-540P-201ENST00000384622 NCKAP5LQ9HCH0 1330 aa2.67□□□□□ -1.98
RNU6-540P-201ENST00000384622 IGF1RP08069 1367 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 GAS6Q14393 721 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 ACDQ96AP0 544 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 EYA1Q99502 592 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 SUV39H2Q9H5I1 410 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 MBIPQ9NS73 344 aa2.66□□□□□ -1.98
RNU6-540P-201ENST00000384622 SLC35F4A4IF30 521 aa2.65□□□□□ -1.99
RNU6-540P-201ENST00000384622 LARP6Q9BRS8 491 aaKnown RBP2.65□□□□□ -1.99
RNU6-540P-201ENST00000384622 FKBP8Q14318 412 aa2.64□□□□□ -1.99
RNU6-540P-201ENST00000384622 LINC00528Q8N1L1 170 aa2.64□□□□□ -1.99
RNU6-540P-201ENST00000384622 CCDC24Q8N4L8 307 aa2.64□□□□□ -1.99
RNU6-540P-201ENST00000384622 KRTAP9-3Q9BYQ3 159 aa2.64□□□□□ -1.99
RNU6-540P-201ENST00000384622 TPSG1Q9NRR2 321 aa2.64□□□□□ -1.99
RNU6-540P-201ENST00000384622 PLEKHG3A1L390 1219 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 FIGNL2A6NMB9 653 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 TTLL8A6PVC2 850 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 PIK3R2O00459 728 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 OIP5O43482 229 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 SLC10A3P09131 477 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 DNAJB2P25686 324 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 MSS51Q4VC12 460 aa2.63□□□□□ -1.99
RNU6-540P-201ENST00000384622 PRRG2O14669 202 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 PADI6Q6TGC4 694 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 RNF19BQ6ZMZ0 732 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 RIC3Q7Z5B4 369 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 TTC13Q8NBP0 860 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 KLF16Q9BXK1 252 aaPredicted RBP2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 NCANO14594 1321 aa2.62□□□□□ -1.99
RNU6-540P-201ENST00000384622 ZIC2O95409 532 aaPredicted RBP2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 C8AP07357 584 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 OSBPP22059 807 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 TMEM134Q9H6X4 195 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 ZFAND3Q9H8U3 227 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 JAG2Q9Y219 1238 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 TLL2Q9Y6L7 1015 aa2.61□□□□□ -1.99
RNU6-540P-201ENST00000384622 GNB5O14775 395 aa2.6□□□□□ -1.99
RNU6-540P-201ENST00000384622 MORN1Q5T089 497 aa2.6□□□□□ -1.99
RNU6-540P-201ENST00000384622 LINC00114Q6XXX2 140 aa2.6□□□□□ -1.99
RNU6-540P-201ENST00000384622 NOP53Q9NZM5 478 aaKnown RBP2.6□□□□□ -1.99
RNU6-540P-201ENST00000384622 SALL2Q9Y467 1007 aaPredicted RBP2.6□□□□□ -1.99
RNU6-540P-201ENST00000384622 DPYSL4O14531 572 aa2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 MMP16P51512 607 aa2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 BRICD5Q6PL45 260 aa2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 LSRQ86X29 649 aaPredicted RBP2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 ITPKCQ96DU7 683 aa2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 SLC27A5Q9Y2P5 690 aa2.59□□□□□ -1.99
RNU6-540P-201ENST00000384622 SHISA8B8ZZ34 492 aa2.58□□□□□ -2
RNU6-540P-201ENST00000384622 ZNF865P0CJ78 1059 aaPredicted RBP2.58□□□□□ -2
RNU6-540P-201ENST00000384622 RSPH4AQ5TD94 716 aa2.58□□□□□ -2
RNU6-540P-201ENST00000384622 SPOCD1Q6ZMY3 1216 aa2.58□□□□□ -2
RNU6-540P-201ENST00000384622 PCMTD2Q9NV79 361 aa2.58□□□□□ -2
RNU6-540P-201ENST00000384622 B8ZZF3 427 aa2.57□□□□□ -2
RNU6-540P-201ENST00000384622 BUD31P41223 144 aaPredicted RBP2.57□□□□□ -2
RNU6-540P-201ENST00000384622 FOXR1Q6PIV2 292 aa2.57□□□□□ -2
RNU6-540P-201ENST00000384622 MEIOBQ8N635 442 aa2.57□□□□□ -2
RNU6-540P-201ENST00000384622 CSRNP1Q96S65 589 aa2.57□□□□□ -2
RNU6-540P-201ENST00000384622 TSEN34Q9BSV6 310 aaKnown RBP2.57□□□□□ -2
RNU6-540P-201ENST00000384622 CDHR5Q9HBB8 845 aa2.57□□□□□ -2
RNU6-540P-201ENST00000384622 AMPD1P23109 780 aa2.56□□□□□ -2
RNU6-540P-201ENST00000384622 ATP6V1AP38606 617 aa2.56□□□□□ -2
RNU6-540P-201ENST00000384622 MFSD10Q14728 455 aa2.56□□□□□ -2
RNU6-540P-201ENST00000384622 OGFOD2Q6N063 350 aa2.56□□□□□ -2
RNU6-540P-201ENST00000384622 NSFL1CQ9UNZ2 370 aaKnown RBP2.56□□□□□ -2
RNU6-540P-201ENST00000384622 GPR25O00155 361 aa2.55□□□□□ -2
RNU6-540P-201ENST00000384622 PRIM1P49642 420 aaKnown RBP2.55□□□□□ -2
RNU6-540P-201ENST00000384622 SH3BP2P78314 561 aa2.55□□□□□ -2
RNU6-540P-201ENST00000384622 MPNDQ8N594 471 aa2.55□□□□□ -2
RNU6-540P-201ENST00000384622 OXCT2Q9BYC2 517 aaPredicted RBP2.55□□□□□ -2
RNU6-540P-201ENST00000384622 WDR26Q9H7D7 661 aa2.55□□□□□ -2
RNU6-540P-201ENST00000384622 RNF112Q9ULX5 631 aa2.55□□□□□ -2
RNU6-540P-201ENST00000384622 H2AFB1P0C5Y9 115 aa2.54□□□□□ -2
RNU6-540P-201ENST00000384622 H2AFB2P0C5Z0 115 aa2.54□□□□□ -2
RNU6-540P-201ENST00000384622 RGS19P49795 217 aa2.54□□□□□ -2
RNU6-540P-201ENST00000384622 FUT2Q10981 343 aa2.54□□□□□ -2
RNU6-540P-201ENST00000384622 LILRA6Q6PI73 481 aa2.54□□□□□ -2
RNU6-540P-201ENST00000384622 RBM46Q8TBY0 533 aaKnown RBP2.54□□□□□ -2
RNU6-540P-201ENST00000384622 RCCD1A6NED2 376 aa2.53□□□□□ -2
RNU6-540P-201ENST00000384622 SPTLC1O15269 473 aa2.53□□□□□ -2
RNU6-540P-201ENST00000384622 DXOO77932 396 aaKnown RBP2.53□□□□□ -2
RNU6-540P-201ENST00000384622 MX2P20592 715 aa2.53□□□□□ -2
RNU6-540P-201ENST00000384622 GIGYF2Q6Y7W6 1299 aaKnown RBP2.53□□□□□ -2
RNU6-540P-201ENST00000384622 EDARADDQ8WWZ3 215 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms