RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 CHMP5Q9NZZ3 219 aa16.18■□□□□ 0.18
NPHP4-203ENST00000378169 DDX11L8A8MPP1 907 aa16.18■□□□□ 0.18
NPHP4-203ENST00000378169 ASXL2Q76L83 1435 aa16.18■□□□□ 0.18
NPHP4-203ENST00000378169 DENND4BO75064 1496 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-203ENST00000378169 PRAG1Q86YV5 1406 aa16.17■□□□□ 0.18
NPHP4-203ENST00000378169 FRAT2O75474 233 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-203ENST00000378169 SYAP1Q96A49 352 aaPredicted RBP16.17■□□□□ 0.18
NPHP4-203ENST00000378169 ANKLE2Q86XL3 938 aa16.16■□□□□ 0.18
NPHP4-203ENST00000378169 CDC45O75419 566 aa16.16■□□□□ 0.18
NPHP4-203ENST00000378169 FAM135AQ9P2D6 1515 aa16.16■□□□□ 0.18
NPHP4-203ENST00000378169 GNAI3P08754 354 aa16.16■□□□□ 0.18
NPHP4-203ENST00000378169 RALGAPBQ86X10 1494 aa16.15■□□□□ 0.18
NPHP4-203ENST00000378169 ZNF530Q6P9A1 599 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-203ENST00000378169 WASLO00401 505 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-203ENST00000378169 CT47B1P0C2W7 299 aaPredicted RBP16.15■□□□□ 0.18
NPHP4-203ENST00000378169 MAGI3Q5TCQ9 1506 aa16.15■□□□□ 0.18
NPHP4-203ENST00000378169 PLEKHO1Q53GL0 409 aaPredicted RBP16.14■□□□□ 0.17
NPHP4-203ENST00000378169 ZC3H6P61129 1189 aaKnown RBP16.14■□□□□ 0.17
NPHP4-203ENST00000378169 ZKSCAN1P17029 563 aaPredicted RBP16.14■□□□□ 0.17
NPHP4-203ENST00000378169 RUFY2Q8WXA3 655 aa16.14■□□□□ 0.17
NPHP4-203ENST00000378169 EIF4G3O43432 1585 aaKnown RBP16.14■□□□□ 0.17
NPHP4-203ENST00000378169 AMOTL2Q9Y2J4 779 aa16.13■□□□□ 0.17
NPHP4-203ENST00000378169 PZPP20742 1482 aa16.13■□□□□ 0.17
NPHP4-203ENST00000378169 CDK11BP21127 795 aaKnown RBP16.12■□□□□ 0.17
NPHP4-203ENST00000378169 GCC1Q96CN9 775 aa16.12■□□□□ 0.17
NPHP4-203ENST00000378169 NEUROD6Q96NK8 337 aa16.12■□□□□ 0.17
NPHP4-203ENST00000378169 ABCA5Q8WWZ7 1642 aa16.12■□□□□ 0.17
NPHP4-203ENST00000378169 GNAI2P04899 355 aa16.11■□□□□ 0.17
NPHP4-203ENST00000378169 STRN4Q9NRL3 753 aa16.11■□□□□ 0.17
NPHP4-203ENST00000378169 CLASRPQ8N2M8 674 aaKnown RBP16.11■□□□□ 0.17
NPHP4-203ENST00000378169 NUP160Q12769 1436 aa16.11■□□□□ 0.17
NPHP4-203ENST00000378169 PER1O15534 1290 aaPredicted RBP16.11■□□□□ 0.17
NPHP4-203ENST00000378169 MSH5O43196 834 aa16.11■□□□□ 0.17
NPHP4-203ENST00000378169 HSP90AB4PQ58FF6 505 aa16.11■□□□□ 0.17
NPHP4-203ENST00000378169 USHBP1Q8N6Y0 703 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.1■□□□□ 0.17
NPHP4-203ENST00000378169 GOLGA6L6A8MZA4 724 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 FOXO3O43524 673 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 HTATSF1O43719 755 aaKnown RBP16.1■□□□□ 0.17
NPHP4-203ENST00000378169 NRDCO43847 1150 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 CHD1LQ86WJ1 897 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 DUOX2Q9NRD8 1548 aa16.1■□□□□ 0.17
NPHP4-203ENST00000378169 FYB1O15117 783 aa16.09■□□□□ 0.17
NPHP4-203ENST00000378169 CARD14Q9BXL6 1004 aa16.09■□□□□ 0.17
NPHP4-203ENST00000378169 NKTRP30414 1462 aaKnown RBP16.09■□□□□ 0.17
NPHP4-203ENST00000378169 ITSN2Q9NZM3 1697 aa16.09■□□□□ 0.17
NPHP4-203ENST00000378169 FAM83GA6ND36 823 aa16.09■□□□□ 0.17
NPHP4-203ENST00000378169 FAM184AQ8NB25 1140 aa16.09■□□□□ 0.17
NPHP4-203ENST00000378169 A2MP01023 1474 aa16.08■□□□□ 0.17
NPHP4-203ENST00000378169 H3BQV1 296 aa16.08■□□□□ 0.16
NPHP4-203ENST00000378169 TRIM27P14373 513 aa16.08■□□□□ 0.16
NPHP4-203ENST00000378169 NEK4P51957 841 aa16.08■□□□□ 0.16
NPHP4-203ENST00000378169 IFFO2Q5TF58 517 aa16.08■□□□□ 0.16
NPHP4-203ENST00000378169 ERC2O15083 957 aa16.08■□□□□ 0.16
NPHP4-203ENST00000378169 PARD3Q8TEW0 1356 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 KIAA2012Q0VF49 1180 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 IL1RAPL2Q9NP60 686 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 NINLQ9Y2I6 1382 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 VPS37CA5D8V6 355 aaPredicted RBP16.07■□□□□ 0.16
NPHP4-203ENST00000378169 SF3A1Q15459 793 aaKnown RBP16.07■□□□□ 0.16
NPHP4-203ENST00000378169 MCTP1Q6DN14 999 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 SRCIN1Q9C0H9 1055 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 EXOC6BQ9Y2D4 811 aa16.07■□□□□ 0.16
NPHP4-203ENST00000378169 WDR7Q9Y4E6 1490 aa16.06■□□□□ 0.16
NPHP4-203ENST00000378169 APPP05067 770 aa16.06■□□□□ 0.16
NPHP4-203ENST00000378169 MYL6BP14649 208 aa16.06■□□□□ 0.16
NPHP4-203ENST00000378169 DDX54Q8TDD1 881 aaKnown RBP16.06■□□□□ 0.16
NPHP4-203ENST00000378169 LRPPRCP42704 1394 aaKnown RBP16.06■□□□□ 0.16
NPHP4-203ENST00000378169 F6X3S4 739 aa16.06■□□□□ 0.16
NPHP4-203ENST00000378169 POGZQ7Z3K3 1410 aa16.05■□□□□ 0.16
NPHP4-203ENST00000378169 TATP17735 454 aaPredicted RBP16.05■□□□□ 0.16
NPHP4-203ENST00000378169 CCT4P50991 539 aaKnown RBP16.05■□□□□ 0.16
NPHP4-203ENST00000378169 SIL1Q9H173 461 aa16.05■□□□□ 0.16
NPHP4-203ENST00000378169 CHAF1AQ13111 956 aaPredicted RBP16.05■□□□□ 0.16
NPHP4-203ENST00000378169 FAM177BA6PVY3 158 aa16.05■□□□□ 0.16
NPHP4-203ENST00000378169 SAMD9Q5K651 1589 aa16.05■□□□□ 0.16
NPHP4-203ENST00000378169 SKOR2Q2VWA4 1001 aaPredicted RBP16.05■□□□□ 0.16
NPHP4-203ENST00000378169 ARID3AQ99856 593 aa16.05■□□□□ 0.16
NPHP4-203ENST00000378169 CSPP1Q1MSJ5 1256 aa16.04■□□□□ 0.16
NPHP4-203ENST00000378169 ZRANB1Q9UGI0 708 aa16.04■□□□□ 0.16
NPHP4-203ENST00000378169 MAP4K4O95819 1239 aaPredicted RBP16.04■□□□□ 0.16
NPHP4-203ENST00000378169 IGHDP01880 384 aa16.04■□□□□ 0.16
NPHP4-203ENST00000378169 KIF3AQ9Y496 699 aa16.04■□□□□ 0.16
NPHP4-203ENST00000378169 ATP6V1DQ9Y5K8 247 aa16.04■□□□□ 0.16
NPHP4-203ENST00000378169 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.03■□□□□ 0.16
NPHP4-203ENST00000378169 SRGAP3O43295 1099 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 TOM1L2Q6ZVM7 507 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 GNAT3A8MTJ3 354 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 FSD1Q9BTV5 496 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 PRDM11Q9NQV5 511 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 NUCB2P80303 420 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 RNF20Q5VTR2 975 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 LRRCC1Q9C099 1032 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 ACEP12821 1306 aa16.03■□□□□ 0.16
NPHP4-203ENST00000378169 HSP90AB2PQ58FF8 381 aa16.02■□□□□ 0.16
NPHP4-203ENST00000378169 SMC3Q9UQE7 1217 aa16.02■□□□□ 0.16
NPHP4-203ENST00000378169 BTBD11A6QL63 1104 aa16.02■□□□□ 0.16
NPHP4-203ENST00000378169 RBM42Q9BTD8 480 aaKnown RBP16.02■□□□□ 0.16
NPHP4-203ENST00000378169 IFT57Q9NWB7 429 aa16.02■□□□□ 0.16
NPHP4-203ENST00000378169 FOSBP53539 338 aa16.02■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms