RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 ST20-MTHFSA0A0A6YYL1 179 aa17.24■□□□□ 0.35
VRK3-202ENST00000377011 MARF1Q9Y4F3 1742 aaKnown RBP17.24■□□□□ 0.35
VRK3-202ENST00000377011 NUTM2GQ5VZR2 741 aa17.23■□□□□ 0.35
VRK3-202ENST00000377011 TESK2Q96S53 571 aa17.23■□□□□ 0.35
VRK3-202ENST00000377011 CRYBG1Q9Y4K1 1723 aa17.23■□□□□ 0.35
VRK3-202ENST00000377011 PAK3O75914 559 aaPredicted RBP17.22■□□□□ 0.35
VRK3-202ENST00000377011 EVC2Q86UK5 1308 aa17.22■□□□□ 0.35
VRK3-202ENST00000377011 NGLY1Q96IV0 654 aa17.21■□□□□ 0.35
VRK3-202ENST00000377011 SBNO2Q9Y2G9 1366 aa17.19■□□□□ 0.34
VRK3-202ENST00000377011 USP47Q96K76 1375 aa17.18■□□□□ 0.34
VRK3-202ENST00000377011 BCL9LQ86UU0 1499 aa17.18■□□□□ 0.34
VRK3-202ENST00000377011 FNBP4Q8N3X1 1017 aaPredicted RBP17.17■□□□□ 0.34
VRK3-202ENST00000377011 ARHGEF10O15013 1369 aa17.17■□□□□ 0.34
VRK3-202ENST00000377011 CD163L1Q9NR16 1453 aa17.17■□□□□ 0.34
VRK3-202ENST00000377011 SOCS7O14512 581 aa17.16■□□□□ 0.34
VRK3-202ENST00000377011 SSH2Q76I76 1423 aa17.16■□□□□ 0.34
VRK3-202ENST00000377011 AKAP12Q02952 1782 aa17.16■□□□□ 0.34
VRK3-202ENST00000377011 FAM83GA6ND36 823 aa17.16■□□□□ 0.34
VRK3-202ENST00000377011 ZNF772Q68DY9 489 aaPredicted RBP17.16■□□□□ 0.34
VRK3-202ENST00000377011 USP21Q9UK80 565 aa17.16■□□□□ 0.34
VRK3-202ENST00000377011 USP6P35125 1406 aa17.15■□□□□ 0.34
VRK3-202ENST00000377011 PHRF1Q9P1Y6 1649 aaKnown RBP17.15■□□□□ 0.34
VRK3-202ENST00000377011 SLC12A5Q9H2X9 1139 aa17.15■□□□□ 0.34
VRK3-202ENST00000377011 QTRT2Q9H974 415 aaKnown RBP17.15■□□□□ 0.34
VRK3-202ENST00000377011 SLIT2O94813 1529 aa17.14■□□□□ 0.33
VRK3-202ENST00000377011 PLCH1Q4KWH8 1693 aa17.14■□□□□ 0.33
VRK3-202ENST00000377011 PIK3C2AO00443 1686 aa17.13■□□□□ 0.33
VRK3-202ENST00000377011 CPSF1Q10570 1443 aaKnown RBP17.13■□□□□ 0.33
VRK3-202ENST00000377011 NRKQ7Z2Y5 1582 aa17.12■□□□□ 0.33
VRK3-202ENST00000377011 HAP1P54257 671 aaPredicted RBP17.12■□□□□ 0.33
VRK3-202ENST00000377011 ABTB2Q8N961 1025 aa17.12■□□□□ 0.33
VRK3-202ENST00000377011 ZRANB1Q9UGI0 708 aa17.12■□□□□ 0.33
VRK3-202ENST00000377011 ATRNO75882 1429 aa17.12■□□□□ 0.33
VRK3-202ENST00000377011 EP400Q96L91 3159 aa17.11■□□□□ 0.33
VRK3-202ENST00000377011 ATAD2Q6PL18 1390 aa17.11■□□□□ 0.33
VRK3-202ENST00000377011 MON2Q7Z3U7 1717 aa17.11■□□□□ 0.33
VRK3-202ENST00000377011 RXRBP28702 533 aa17.1■□□□□ 0.33
VRK3-202ENST00000377011 ZC3H6P61129 1189 aaKnown RBP17.1■□□□□ 0.33
VRK3-202ENST00000377011 TMC1Q8TDI8 760 aa17.1■□□□□ 0.33
VRK3-202ENST00000377011 RGS12O14924 1447 aa17.1■□□□□ 0.33
VRK3-202ENST00000377011 CHRNA2Q15822 529 aa17.1■□□□□ 0.33
VRK3-202ENST00000377011 TTC21BQ7Z4L5 1316 aa17.09■□□□□ 0.33
VRK3-202ENST00000377011 GLI3P10071 1580 aa17.09■□□□□ 0.33
VRK3-202ENST00000377011 NRAPQ86VF7 1730 aa17.09■□□□□ 0.33
VRK3-202ENST00000377011 KIAA0232Q92628 1395 aa17.09■□□□□ 0.33
VRK3-202ENST00000377011 USP19O94966 1318 aa17.08■□□□□ 0.32
VRK3-202ENST00000377011 A0A1W2PP64 1363 aa17.07■□□□□ 0.32
VRK3-202ENST00000377011 KTN1Q86UP2 1357 aaKnown RBP17.07■□□□□ 0.32
VRK3-202ENST00000377011 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.07■□□□□ 0.32
VRK3-202ENST00000377011 UNC5CLQ8IV45 518 aa17.07■□□□□ 0.32
VRK3-202ENST00000377011 RBM6P78332 1123 aaKnown RBP17.06■□□□□ 0.32
VRK3-202ENST00000377011 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.06■□□□□ 0.32
VRK3-202ENST00000377011 BTG4Q9NY30 223 aa17.06■□□□□ 0.32
VRK3-202ENST00000377011 TRPC5Q9UL62 973 aaPredicted RBP17.06■□□□□ 0.32
VRK3-202ENST00000377011 HSPA5P11021 654 aaKnown RBP17.05■□□□□ 0.32
VRK3-202ENST00000377011 NLRP6P59044 892 aa17.05■□□□□ 0.32
VRK3-202ENST00000377011 NME9Q86XW9 330 aa17.05■□□□□ 0.32
VRK3-202ENST00000377011 NWD2Q9ULI1 1742 aa17.05■□□□□ 0.32
VRK3-202ENST00000377011 COL14A1Q05707 1796 aaKnown RBP17.05■□□□□ 0.32
VRK3-202ENST00000377011 CCER2I3L3R5 266 aa17.04■□□□□ 0.32
VRK3-202ENST00000377011 SLIT3O75094 1523 aa17.04■□□□□ 0.32
VRK3-202ENST00000377011 GCP02774 474 aa17.04■□□□□ 0.32
VRK3-202ENST00000377011 MYOM1P52179 1685 aa17.04■□□□□ 0.32
VRK3-202ENST00000377011 SOX12O15370 315 aa17.03■□□□□ 0.32
VRK3-202ENST00000377011 GJD4Q96KN9 370 aaPredicted RBP17.03■□□□□ 0.32
VRK3-202ENST00000377011 ZNF692Q9BU19 519 aaPredicted RBP17.03■□□□□ 0.32
VRK3-202ENST00000377011 PRDM11Q9NQV5 511 aa17.03■□□□□ 0.32
VRK3-202ENST00000377011 CAMTA1Q9Y6Y1 1673 aa17.02■□□□□ 0.32
VRK3-202ENST00000377011 C11orf95C9JLR9 678 aaPredicted RBP17.02■□□□□ 0.32
VRK3-202ENST00000377011 LMO7Q8WWI1 1683 aa17.02■□□□□ 0.32
VRK3-202ENST00000377011 TMF1P82094 1093 aa17.01■□□□□ 0.31
VRK3-202ENST00000377011 NLRP13Q86W25 1043 aa17.01■□□□□ 0.31
VRK3-202ENST00000377011 PUS7Q96PZ0 661 aaKnown RBP17.01■□□□□ 0.31
VRK3-202ENST00000377011 CDK12Q9NYV4 1490 aaPredicted RBP17.01■□□□□ 0.31
VRK3-202ENST00000377011 BRD4O60885 1362 aaPredicted RBP17■□□□□ 0.31
VRK3-202ENST00000377011 ZBTB7CA1YPR0 619 aa17■□□□□ 0.31
VRK3-202ENST00000377011 COL18A1P39060 1754 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 BRWD3Q6RI45 1802 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 VPS72Q15906 364 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 NFAT5O94916 1531 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 FBLN1P23142 703 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 DDX10Q13206 875 aaKnown RBP16.99■□□□□ 0.31
VRK3-202ENST00000377011 AXIN2Q9Y2T1 843 aa16.99■□□□□ 0.31
VRK3-202ENST00000377011 RGPD5Q99666 1765 aa16.98■□□□□ 0.31
VRK3-202ENST00000377011 HDGFL2Q7Z4V5 671 aaPredicted RBP16.98■□□□□ 0.31
VRK3-202ENST00000377011 STRN4Q9NRL3 753 aa16.98■□□□□ 0.31
VRK3-202ENST00000377011 SUPT16HQ9Y5B9 1047 aaKnown RBP16.98■□□□□ 0.31
VRK3-202ENST00000377011 TTC21AQ8NDW8 1320 aa16.98■□□□□ 0.31
VRK3-202ENST00000377011 CPDO75976 1380 aa16.98■□□□□ 0.31
VRK3-202ENST00000377011 EDC4Q6P2E9 1401 aaKnown RBP16.98■□□□□ 0.31
VRK3-202ENST00000377011 EIF4G2P78344 907 aaKnown RBP eCLIP16.97■□□□□ 0.311e-6■■■■■ 27.9
VRK3-202ENST00000377011 CARD14Q9BXL6 1004 aa16.97■□□□□ 0.31
VRK3-202ENST00000377011 CCDC9Q9Y3X0 531 aaKnown RBP16.97■□□□□ 0.31
VRK3-202ENST00000377011 USP54Q70EL1 1684 aa16.96■□□□□ 0.31
VRK3-202ENST00000377011 USP31Q70CQ4 1352 aa16.96■□□□□ 0.3
VRK3-202ENST00000377011 ANKRD36BQ8N2N9 1353 aa16.96■□□□□ 0.3
VRK3-202ENST00000377011 LARP1Q6PKG0 1096 aaKnown RBP16.96■□□□□ 0.3
VRK3-202ENST00000377011 POLR3GLQ9BT43 218 aa16.96■□□□□ 0.3
VRK3-202ENST00000377011 TERF2IPQ9NYB0 399 aa16.96■□□□□ 0.3
VRK3-202ENST00000377011 OVOS2A0A0J9YW53 1432 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms