RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 EP400Q96L91 3159 aa19.7■□□□□ 0.74
TNFRSF1A-202ENST00000366159 HAP1P54257 671 aaPredicted RBP19.69■□□□□ 0.74
TNFRSF1A-202ENST00000366159 ACEP12821 1306 aa19.69■□□□□ 0.74
TNFRSF1A-202ENST00000366159 QRICH2Q9H0J4 1663 aa19.68■□□□□ 0.74
TNFRSF1A-202ENST00000366159 VPS72Q15906 364 aa19.68■□□□□ 0.74
TNFRSF1A-202ENST00000366159 NBPF8Q3BBV2 869 aa19.68■□□□□ 0.74
TNFRSF1A-202ENST00000366159 PLEKHG5O94827 1062 aa19.67■□□□□ 0.74
TNFRSF1A-202ENST00000366159 ONECUT3O60422 494 aaPredicted RBP19.66■□□□□ 0.74
TNFRSF1A-202ENST00000366159 ATAD2Q6PL18 1390 aa19.66■□□□□ 0.74
TNFRSF1A-202ENST00000366159 NRAPQ86VF7 1730 aa19.65■□□□□ 0.74
TNFRSF1A-202ENST00000366159 PAK3O75914 559 aaPredicted RBP19.65■□□□□ 0.74
TNFRSF1A-202ENST00000366159 COL14A1Q05707 1796 aaKnown RBP19.64■□□□□ 0.74
TNFRSF1A-202ENST00000366159 CABP2Q9NPB3 220 aa19.64■□□□□ 0.73
TNFRSF1A-202ENST00000366159 ROCK2O75116 1388 aaKnown RBP19.63■□□□□ 0.73
TNFRSF1A-202ENST00000366159 TRIM26Q12899 539 aaPredicted RBP19.63■□□□□ 0.73
TNFRSF1A-202ENST00000366159 PPIP5K1Q6PFW1 1433 aa19.63■□□□□ 0.73
TNFRSF1A-202ENST00000366159 SRPK2P78362 688 aaKnown RBP19.62■□□□□ 0.73
TNFRSF1A-202ENST00000366159 PHRF1Q9P1Y6 1649 aaKnown RBP19.62■□□□□ 0.73
TNFRSF1A-202ENST00000366159 BTG4Q9NY30 223 aa19.61■□□□□ 0.73
TNFRSF1A-202ENST00000366159 BRWD3Q6RI45 1802 aa19.59■□□□□ 0.73
TNFRSF1A-202ENST00000366159 BRD4O60885 1362 aaPredicted RBP19.59■□□□□ 0.73
TNFRSF1A-202ENST00000366159 SEPT12Q8IYM1 358 aa19.58■□□□□ 0.73
TNFRSF1A-202ENST00000366159 CABP1Q9NZU7 370 aa19.58■□□□□ 0.73
TNFRSF1A-202ENST00000366159 USP19O94966 1318 aa19.57■□□□□ 0.72
TNFRSF1A-202ENST00000366159 EVC2Q86UK5 1308 aa19.57■□□□□ 0.72
TNFRSF1A-202ENST00000366159 SSH2Q76I76 1423 aa19.57■□□□□ 0.72
TNFRSF1A-202ENST00000366159 KIAA0232Q92628 1395 aa19.57■□□□□ 0.72
TNFRSF1A-202ENST00000366159 NUTM2GQ5VZR2 741 aa19.56■□□□□ 0.72
TNFRSF1A-202ENST00000366159 ABTB2Q8N961 1025 aa19.56■□□□□ 0.72
TNFRSF1A-202ENST00000366159 SBNO2Q9Y2G9 1366 aa19.56■□□□□ 0.72
TNFRSF1A-202ENST00000366159 CCDC125Q86Z20 511 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 PRDM11Q9NQV5 511 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 USP6P35125 1406 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 NRKQ7Z2Y5 1582 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 SPATA31A5Q5VU36 1347 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 SPATA31A7Q8IWB4 1347 aa19.55■□□□□ 0.72
TNFRSF1A-202ENST00000366159 CCDC9Q9Y3X0 531 aaKnown RBP19.53■□□□□ 0.72
TNFRSF1A-202ENST00000366159 CPDO75976 1380 aa19.53■□□□□ 0.72
TNFRSF1A-202ENST00000366159 TONSLQ96HA7 1378 aa19.53■□□□□ 0.72
TNFRSF1A-202ENST00000366159 ZC3H6P61129 1189 aaKnown RBP19.52■□□□□ 0.72
TNFRSF1A-202ENST00000366159 CHRNA2Q15822 529 aa19.52■□□□□ 0.72
TNFRSF1A-202ENST00000366159 NLRP13Q86W25 1043 aa19.51■□□□□ 0.71
TNFRSF1A-202ENST00000366159 LMO7Q8WWI1 1683 aa19.51■□□□□ 0.71
TNFRSF1A-202ENST00000366159 FAM98CQ17RN3 349 aaKnown RBP19.51■□□□□ 0.71
TNFRSF1A-202ENST00000366159 CARD11Q9BXL7 1154 aa19.51■□□□□ 0.71
TNFRSF1A-202ENST00000366159 THSD7AQ9UPZ6 1657 aa19.5■□□□□ 0.71
TNFRSF1A-202ENST00000366159 CAMTA1Q9Y6Y1 1673 aa19.5■□□□□ 0.71
TNFRSF1A-202ENST00000366159 GCP02774 474 aa19.5■□□□□ 0.71
TNFRSF1A-202ENST00000366159 KRT27Q7Z3Y8 459 aa19.5■□□□□ 0.71
TNFRSF1A-202ENST00000366159 BLMP54132 1417 aaPredicted RBP19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 CPSF1Q10570 1443 aaKnown RBP19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 AKAP12Q02952 1782 aa19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 SPATA31A1Q5TZJ5 1347 aa19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 ZNF692Q9BU19 519 aaPredicted RBP19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 SLIT3O75094 1523 aa19.49■□□□□ 0.71
TNFRSF1A-202ENST00000366159 PIK3C2AO00443 1686 aa19.48■□□□□ 0.71
TNFRSF1A-202ENST00000366159 NLRP6P59044 892 aa19.45■□□□□ 0.7
TNFRSF1A-202ENST00000366159 TTC21BQ7Z4L5 1316 aa19.45■□□□□ 0.7
TNFRSF1A-202ENST00000366159 CD163L1Q9NR16 1453 aa19.44■□□□□ 0.7
TNFRSF1A-202ENST00000366159 STRN4Q9NRL3 753 aa19.44■□□□□ 0.7
TNFRSF1A-202ENST00000366159 PUS7Q96PZ0 661 aaKnown RBP19.43■□□□□ 0.7
TNFRSF1A-202ENST00000366159 LARP1Q6PKG0 1096 aaKnown RBP19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 BARGINQ6ZT62 677 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 TESK2Q96S53 571 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 TTC21AQ8NDW8 1320 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 SRCAPQ6ZRS2 3230 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 MON2Q7Z3U7 1717 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 COL18A1P39060 1754 aa19.42■□□□□ 0.7
TNFRSF1A-202ENST00000366159 COL5A2P05997 1499 aaPredicted RBP19.41■□□□□ 0.7
TNFRSF1A-202ENST00000366159 AATKQ6ZMQ8 1374 aa19.41■□□□□ 0.7
TNFRSF1A-202ENST00000366159 A0A0G2JS52 829 aa19.4■□□□□ 0.7
TNFRSF1A-202ENST00000366159 EVA1CP58658 441 aa19.4■□□□□ 0.7
TNFRSF1A-202ENST00000366159 MYT1Q01538 1121 aa19.4■□□□□ 0.7
TNFRSF1A-202ENST00000366159 KTN1Q86UP2 1357 aaKnown RBP19.4■□□□□ 0.7
TNFRSF1A-202ENST00000366159 DEFB132Q7Z7B7 95 aa19.39■□□□□ 0.69
TNFRSF1A-202ENST00000366159 FAM182BQ5T319 152 aa19.38■□□□□ 0.69
TNFRSF1A-202ENST00000366159 ARHGEF25Q86VW2 580 aa19.38■□□□□ 0.69
TNFRSF1A-202ENST00000366159 USP54Q70EL1 1684 aa19.37■□□□□ 0.69
TNFRSF1A-202ENST00000366159 USP31Q70CQ4 1352 aa19.37■□□□□ 0.69
TNFRSF1A-202ENST00000366159 AXIN2Q9Y2T1 843 aa19.37■□□□□ 0.69
TNFRSF1A-202ENST00000366159 THRAP3Q9Y2W1 955 aaKnown RBP19.37■□□□□ 0.69
TNFRSF1A-202ENST00000366159 NFAT5O94916 1531 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 ST20-MTHFSA0A0A6YYL1 179 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 TCP11L2Q8N4U5 519 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 KCNH5Q8NCM2 988 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 SLC12A5Q9H2X9 1139 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 USP35Q9P2H5 1018 aa19.36■□□□□ 0.69
TNFRSF1A-202ENST00000366159 CRB1P82279 1406 aa19.35■□□□□ 0.69
TNFRSF1A-202ENST00000366159 SF3B2Q13435 895 aaKnown RBP19.34■□□□□ 0.69
TNFRSF1A-202ENST00000366159 ZRANB1Q9UGI0 708 aa19.34■□□□□ 0.69
TNFRSF1A-202ENST00000366159 RGPD1P0DJD0 1748 aa19.34■□□□□ 0.69
TNFRSF1A-202ENST00000366159 TNS1Q9HBL0 1735 aaKnown RBP19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 PARP4Q9UKK3 1724 aaKnown RBP19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 TIMELESSQ9UNS1 1208 aa19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 DISP2A7MBM2 1401 aa19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 EDC4Q6P2E9 1401 aaKnown RBP19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 A0A1W2PP64 1363 aa19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 CLSPNQ9HAW4 1339 aa19.32■□□□□ 0.68
TNFRSF1A-202ENST00000366159 SLC24A1O60721 1099 aa19.31■□□□□ 0.68
TNFRSF1A-202ENST00000366159 FAM196AQ6ZSG2 479 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms