RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 HSP90AB4PQ58FF6 505 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 NLRP2Q9NX02 1062 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 ROCK1Q13464 1354 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 ERLIN2O94905 339 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 GSE1Q14687 1217 aa12.2□□□□□ -0.46
CLIP1-202ENST00000358808 TXLNAP40222 546 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 BRPF1P55201 1214 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-202ENST00000358808 PDE3BQ13370 1112 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 MATR3P43243 847 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLIP1-202ENST00000358808 RBM5P52756 815 aaKnown RBP eCLIP12.19□□□□□ -0.46
CLIP1-202ENST00000358808 FAM13BQ9NYF5 915 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 TSPYL4Q9UJ04 414 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 CENPQQ7L2Z9 268 aaPredicted RBP12.19□□□□□ -0.46
CLIP1-202ENST00000358808 SMARCE1Q969G3 411 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 TSPYL1Q9H0U9 437 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 ZHX3Q9H4I2 956 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 KIF6Q6ZMV9 814 aa12.19□□□□□ -0.46
CLIP1-202ENST00000358808 NCOA2Q15596 1464 aa12.18□□□□□ -0.46
CLIP1-202ENST00000358808 FAM161AQ3B820 660 aa12.18□□□□□ -0.46
CLIP1-202ENST00000358808 CHMP5Q9NZZ3 219 aa12.18□□□□□ -0.46
CLIP1-202ENST00000358808 API5Q9BZZ5 524 aaKnown RBP12.18□□□□□ -0.46
CLIP1-202ENST00000358808 DIAPH1O60610 1272 aaKnown RBP12.18□□□□□ -0.46
CLIP1-202ENST00000358808 FILIP1LQ4L180 1135 aa12.18□□□□□ -0.46
CLIP1-202ENST00000358808 LRRC9Q6ZRR7 1453 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 SDF4Q9BRK5 362 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 RBM42Q9BTD8 480 aaKnown RBP12.17□□□□□ -0.46
CLIP1-202ENST00000358808 RSPH6AQ9H0K4 717 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 EZRP15311 586 aaKnown RBP12.17□□□□□ -0.46
CLIP1-202ENST00000358808 TROQ12816 1431 aaPredicted RBP12.17□□□□□ -0.46
CLIP1-202ENST00000358808 MYBBP1AQ9BQG0 1328 aaKnown RBP12.17□□□□□ -0.46
CLIP1-202ENST00000358808 SPDYE4A6NLX3 237 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 COG6Q9Y2V7 657 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 INTS3Q68E01 1043 aaKnown RBP12.17□□□□□ -0.46
CLIP1-202ENST00000358808 DESP17661 470 aa12.17□□□□□ -0.46
CLIP1-202ENST00000358808 E9PSI1 815 aa12.16□□□□□ -0.46
CLIP1-202ENST00000358808 SMC2O95347 1197 aa12.16□□□□□ -0.46
CLIP1-202ENST00000358808 NUTM2GQ5VZR2 741 aa12.16□□□□□ -0.46
CLIP1-202ENST00000358808 DNAJC2Q99543 621 aaKnown RBP12.16□□□□□ -0.46
CLIP1-202ENST00000358808 DHX57Q6P158 1386 aaKnown RBP12.16□□□□□ -0.46
CLIP1-202ENST00000358808 AXDND1Q5T1B0 1012 aaPredicted RBP12.16□□□□□ -0.46
CLIP1-202ENST00000358808 EXOC6Q8TAG9 804 aa12.16□□□□□ -0.46
CLIP1-202ENST00000358808 DDX19BQ9UMR2 479 aa12.16□□□□□ -0.46
CLIP1-202ENST00000358808 FGD6Q6ZV73 1430 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 FSD1Q9BTV5 496 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 CD109Q6YHK3 1445 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 RIPK4P57078 832 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 TANGO6Q9C0B7 1094 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 NINLQ9Y2I6 1382 aa12.15□□□□□ -0.46
CLIP1-202ENST00000358808 SEPT11Q9NVA2 429 aaKnown RBP12.15□□□□□ -0.46
CLIP1-202ENST00000358808 CWC15Q9P013 229 aaKnown RBP12.15□□□□□ -0.46
CLIP1-202ENST00000358808 EIF4G3O43432 1585 aaKnown RBP12.14□□□□□ -0.47
CLIP1-202ENST00000358808 PSMA5P28066 241 aa12.14□□□□□ -0.47
CLIP1-202ENST00000358808 STK11IPQ8N1F8 1099 aa12.14□□□□□ -0.47
CLIP1-202ENST00000358808 HSP90AB3PQ58FF7 597 aa12.14□□□□□ -0.47
CLIP1-202ENST00000358808 GOLGA6L10A6NI86 522 aa12.14□□□□□ -0.47
CLIP1-202ENST00000358808 GNL3LQ9NVN8 582 aaKnown RBP12.14□□□□□ -0.47
CLIP1-202ENST00000358808 PROSER2Q86WR7 435 aaPredicted RBP12.14□□□□□ -0.47
CLIP1-202ENST00000358808 DHX37Q8IY37 1157 aaKnown RBP12.14□□□□□ -0.47
CLIP1-202ENST00000358808 TTC39AQ5SRH9 613 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 TMEM87AQ8NBN3 555 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 GPRASP1Q5JY77 1395 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 KIF14Q15058 1648 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 TRIM21P19474 475 aaKnown RBP12.13□□□□□ -0.47
CLIP1-202ENST00000358808 ESCO1Q5FWF5 840 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 TAX1BP1Q86VP1 789 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 ZNHIT6Q9NWK9 470 aaKnown RBP12.13□□□□□ -0.47
CLIP1-202ENST00000358808 DEF6Q9H4E7 631 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 GBP2P32456 591 aaPredicted RBP12.13□□□□□ -0.47
CLIP1-202ENST00000358808 CHMP4BP1P59074 171 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 CNNM1Q9NRU3 951 aa12.13□□□□□ -0.47
CLIP1-202ENST00000358808 CT47B1P0C2W7 299 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 UBTFL1P0CB47 393 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 HMGN5P82970 282 aaKnown RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 PAXIP1Q6ZW49 1069 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 PLB1Q6P1J6 1458 aa12.12□□□□□ -0.47
CLIP1-202ENST00000358808 PIP4K2AP48426 406 aaPredicted RBP12.12□□□□□ -0.47
CLIP1-202ENST00000358808 CRBNQ96SW2 442 aa12.12□□□□□ -0.47
CLIP1-202ENST00000358808 CCDC181Q5TID7 509 aa12.12□□□□□ -0.47
CLIP1-202ENST00000358808 CNTROBQ8N137 903 aa12.12□□□□□ -0.47
CLIP1-202ENST00000358808 MIA2Q96PC5 1412 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 NUTM2BA6NNL0 878 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 NUTM2EB1AL46 878 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 NUTM2AQ8IVF1 878 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 SUPT6HQ7KZ85 1726 aaKnown RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 SCAPERQ9BY12 1400 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 ZSCAN29Q8IWY8 852 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 FMNL2Q96PY5 1086 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 WDR70Q9NW82 654 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 SOGA3Q5TF21 947 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 DZIP1LQ8IYY4 767 aaKnown RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 AFAP1Q8N556 730 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 STRN4Q9NRL3 753 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.11□□□□□ -0.47
CLIP1-202ENST00000358808 ADAMTS12P58397 1594 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 NUCB2P80303 420 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 ARAP1Q96P48 1450 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 TXNDC2Q86VQ3 553 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 CCDC112Q8NEF3 446 aa12.11□□□□□ -0.47
CLIP1-202ENST00000358808 ZNF644Q9H582 1327 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms