RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ENOX2Q16206 610 aaKnown RBP8.88□□□□□ -0.99
VPS13A-202ENST00000357409 DZIP1LQ8IYY4 767 aaKnown RBP8.88□□□□□ -0.99
VPS13A-202ENST00000357409 WWC2Q6AWC2 1192 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC144CPQ8IYA2 1237 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 CDK19Q9BWU1 502 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 NEFHP12036 1026 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 ISM2Q6H9L7 571 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 NLRP13Q86W25 1043 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 NUTM1Q86Y26 1132 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 RAI14Q9P0K7 980 aa8.88□□□□□ -0.99
VPS13A-202ENST00000357409 NOB1Q9ULX3 412 aaKnown RBP8.88□□□□□ -0.99
VPS13A-202ENST00000357409 IDH1O75874 414 aaKnown RBP8.87□□□□□ -0.99
VPS13A-202ENST00000357409 FAM170AA1A519 330 aa8.87□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC47Q96A33 483 aaKnown RBP8.87□□□□□ -0.99
VPS13A-202ENST00000357409 SMARCA5O60264 1052 aaPredicted RBP8.87□□□□□ -0.99
VPS13A-202ENST00000357409 TERF1P54274 439 aa8.87□□□□□ -0.99
VPS13A-202ENST00000357409 TNIKQ9UKE5 1360 aa8.87□□□□□ -0.99
VPS13A-202ENST00000357409 PRDM11Q9NQV5 511 aa8.87□□□□□ -0.99
VPS13A-202ENST00000357409 SDF4Q9BRK5 362 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 IQSEC3Q9UPP2 1182 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-202ENST00000357409 AK7Q96M32 723 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 DNA2P51530 1060 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 CSPP1Q1MSJ5 1256 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 DDX11Q96FC9 970 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 MPHOSPH8Q99549 860 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 JAG2Q9Y219 1238 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 RBM10P98175 930 aaKnown RBP8.86□□□□□ -0.99
VPS13A-202ENST00000357409 CSPG5O95196 566 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 ANXA1P04083 346 aa8.86□□□□□ -0.99
VPS13A-202ENST00000357409 ZNF771Q7L3S4 317 aaPredicted RBP8.86□□□□□ -0.99
VPS13A-202ENST00000357409 CWC27Q6UX04 472 aaKnown RBP8.86□□□□□ -0.99
VPS13A-202ENST00000357409 CGNL1Q0VF96 1302 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC24Q8N4L8 307 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 RRP1P56182 461 aaKnown RBP8.85□□□□□ -0.99
VPS13A-202ENST00000357409 DCAF1Q9Y4B6 1507 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 SSR1P43307 286 aaKnown RBP8.85□□□□□ -0.99
VPS13A-202ENST00000357409 CDK5RAP3Q96JB5 506 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC8Q9H0W5 538 aaPredicted RBP8.85□□□□□ -0.99
VPS13A-202ENST00000357409 PRPF40AO75400 957 aaKnown RBP8.85□□□□□ -0.99
VPS13A-202ENST00000357409 MAPK8IP2Q13387 824 aaPredicted RBP8.85□□□□□ -0.99
VPS13A-202ENST00000357409 CABLES1Q8TDN4 633 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 TNNT1P13805 278 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 CHMP4AQ9BY43 222 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 IFT57Q9NWB7 429 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 ARHGAP35Q9NRY4 1499 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 DTNBO60941 627 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 ZNF76P36508 570 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 MMRN2Q9H8L6 949 aa8.85□□□□□ -0.99
VPS13A-202ENST00000357409 TPM1P09493 284 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 HDGFL1Q5TGJ6 251 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 RUFY2Q8WXA3 655 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 ZNF408Q9H9D4 720 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 LRP2BPQ9P2M1 347 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 BTBD11A6QL63 1104 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 ATXN8OSP0DMR3 200 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 MCM10Q7L590 875 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 NEK4P51957 841 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC158Q5M9N0 1113 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 VTI1AQ96AJ9 217 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 SAFBQ15424 915 aaKnown RBP eCLIP8.84□□□□□ -0.99
VPS13A-202ENST00000357409 CLASRPQ8N2M8 674 aaKnown RBP8.84□□□□□ -0.99
VPS13A-202ENST00000357409 SCLT1Q96NL6 688 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 HDAC5Q9UQL6 1122 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 MYD88Q99836 296 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 F6X3S4 739 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 CCDC57Q2TAC2 916 aa8.84□□□□□ -0.99
VPS13A-202ENST00000357409 NFKBIBQ15653 356 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 FIBPO43427 364 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 SMC2O95347 1197 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 TWISTNBQ3B726 338 aaPredicted RBP8.83□□□□□ -1
VPS13A-202ENST00000357409 CCER2I3L3R5 266 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 TBC1D2BQ9UPU7 963 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 CCDC184Q52MB2 194 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 ATP5J2-PTCD1G3V325 749 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 BOLA2Q9H3K6 86 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 KIF3AQ9Y496 699 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 RUSC2Q8N2Y8 1516 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 PRKG1Q13976 671 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 TMEM87AQ8NBN3 555 aa8.83□□□□□ -1
VPS13A-202ENST00000357409 RUNDC1Q96C34 613 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 MYBBP1AQ9BQG0 1328 aaKnown RBP8.82□□□□□ -1
VPS13A-202ENST00000357409 PLEKHO1Q53GL0 409 aaPredicted RBP8.82□□□□□ -1
VPS13A-202ENST00000357409 TCP11L2Q8N4U5 519 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 C6orf229H3BNL8 230 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 ZBTB3Q9H5J0 574 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 ZNF530Q6P9A1 599 aaPredicted RBP8.82□□□□□ -1
VPS13A-202ENST00000357409 ZNF526Q8TF50 670 aaPredicted RBP8.82□□□□□ -1
VPS13A-202ENST00000357409 UIMC1Q96RL1 719 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 ANKIB1Q9P2G1 1089 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 CEP164Q9UPV0 1460 aa8.82□□□□□ -1
VPS13A-202ENST00000357409 PRKRIP1Q9H875 184 aaPredicted RBP8.82□□□□□ -1
VPS13A-202ENST00000357409 HSPA2P54652 639 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 SNRKQ9NRH2 765 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 CAVIN1Q6NZI2 390 aaKnown RBP8.81□□□□□ -1
VPS13A-202ENST00000357409 IPO7O95373 1038 aaKnown RBP8.81□□□□□ -1
VPS13A-202ENST00000357409 UBA5Q9GZZ9 404 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 PTPRGP23470 1445 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 RIMBP2O15034 1052 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 FBXO31Q5XUX0 539 aaPredicted RBP8.81□□□□□ -1
VPS13A-202ENST00000357409 CAGE1Q8TC20 777 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms