RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 ERC1Q8IUD2 1116 aa21.63■■□□□ 1.05
COL18A1-202ENST00000355480 LRRC9Q6ZRR7 1453 aa21.63■■□□□ 1.05
COL18A1-202ENST00000355480 DDX54Q8TDD1 881 aaKnown RBP21.62■■□□□ 1.05
COL18A1-202ENST00000355480 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.62■■□□□ 1.058e-7■■■■■ 55.2
COL18A1-202ENST00000355480 IFT57Q9NWB7 429 aa21.62■■□□□ 1.05
COL18A1-202ENST00000355480 HIP1O00291 1037 aa21.62■■□□□ 1.05
COL18A1-202ENST00000355480 CCDC158Q5M9N0 1113 aa21.62■■□□□ 1.05
COL18A1-202ENST00000355480 ZFYVE27Q5T4F4 411 aa21.62■■□□□ 1.05
COL18A1-202ENST00000355480 HDGFL1Q5TGJ6 251 aa21.62■■□□□ 1.05
COL18A1-202ENST00000355480 GNL3LQ9NVN8 582 aaKnown RBP21.62■■□□□ 1.05
COL18A1-202ENST00000355480 CCAR1Q8IX12 1150 aaKnown RBP21.61■■□□□ 1.05
COL18A1-202ENST00000355480 GNAI2P04899 355 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 PDILTQ8N807 584 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 C1orf115Q9H7X2 142 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 SYNJ2O15056 1496 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 SULT6B1Q6IMI4 303 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 CDK19Q9BWU1 502 aa21.61■■□□□ 1.05
COL18A1-202ENST00000355480 SF3B2Q13435 895 aaKnown RBP21.6■■□□□ 1.05
COL18A1-202ENST00000355480 TMEM132AQ24JP5 1023 aa21.6■■□□□ 1.05
COL18A1-202ENST00000355480 SLC4A2P04920 1241 aa21.6■■□□□ 1.05
COL18A1-202ENST00000355480 RUFY1Q96T51 708 aa21.59■■□□□ 1.05
COL18A1-202ENST00000355480 RSPH6AQ9H0K4 717 aa21.59■■□□□ 1.05
COL18A1-202ENST00000355480 MNS1Q8NEH6 495 aa21.59■■□□□ 1.05
COL18A1-202ENST00000355480 CDK5RAP3Q96JB5 506 aa21.59■■□□□ 1.05
COL18A1-202ENST00000355480 CDCA7LQ96GN5 454 aa21.58■■□□□ 1.05
COL18A1-202ENST00000355480 CABP1Q9NZU7 370 aa21.58■■□□□ 1.05
COL18A1-202ENST00000355480 CASKIN1Q8WXD9 1431 aa21.58■■□□□ 1.05
COL18A1-202ENST00000355480 PRG4Q92954 1404 aaPredicted RBP21.58■■□□□ 1.05
COL18A1-202ENST00000355480 ZNF530Q6P9A1 599 aaPredicted RBP21.58■■□□□ 1.05
COL18A1-202ENST00000355480 NEK4P51957 841 aa21.58■■□□□ 1.04
COL18A1-202ENST00000355480 ZNF692Q9BU19 519 aaPredicted RBP21.57■■□□□ 1.04
COL18A1-202ENST00000355480 SLC12A5Q9H2X9 1139 aa21.57■■□□□ 1.04
COL18A1-202ENST00000355480 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.57■■□□□ 1.041e-7■■■■□ 26
COL18A1-202ENST00000355480 ATP2B2Q01814 1243 aa21.57■■□□□ 1.04
COL18A1-202ENST00000355480 ZNF428Q96B54 188 aa21.57■■□□□ 1.04
COL18A1-202ENST00000355480 SPG7Q9UQ90 795 aa21.57■■□□□ 1.04
COL18A1-202ENST00000355480 TSR2Q969E8 191 aaKnown RBP21.56■■□□□ 1.04
COL18A1-202ENST00000355480 GRIN2BQ13224 1484 aa21.56■■□□□ 1.04
COL18A1-202ENST00000355480 NBPF1Q3BBV0 1214 aa21.56■■□□□ 1.04
COL18A1-202ENST00000355480 NOB1Q9ULX3 412 aaKnown RBP21.56■■□□□ 1.04
COL18A1-202ENST00000355480 PNISRQ8TF01 805 aaKnown RBP21.55■■□□□ 1.04
COL18A1-202ENST00000355480 SIL1Q9H173 461 aa21.55■■□□□ 1.04
COL18A1-202ENST00000355480 FANCIQ9NVI1 1328 aa21.55■■□□□ 1.04
COL18A1-202ENST00000355480 ZNF771Q7L3S4 317 aaPredicted RBP21.55■■□□□ 1.04
COL18A1-202ENST00000355480 HSP90AB2PQ58FF8 381 aa21.55■■□□□ 1.04
COL18A1-202ENST00000355480 CDR1P51861 262 aa21.55■■□□□ 1.04
COL18A1-202ENST00000355480 TXLNAP40222 546 aa21.54■■□□□ 1.04
COL18A1-202ENST00000355480 TEX35Q5T0J7 233 aa21.54■■□□□ 1.04
COL18A1-202ENST00000355480 KINO60870 393 aaKnown RBP21.54■■□□□ 1.04
COL18A1-202ENST00000355480 MYL6BP14649 208 aa21.54■■□□□ 1.04
COL18A1-202ENST00000355480 GCC1Q96CN9 775 aa21.54■■□□□ 1.04
COL18A1-202ENST00000355480 AK7Q96M32 723 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 PDZRN3Q9UPQ7 1066 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 SCAPERQ9BY12 1400 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 KRT18P05783 430 aaKnown RBP21.53■■□□□ 1.04
COL18A1-202ENST00000355480 CCDC173Q0VFZ6 552 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 PDCP20941 246 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 KIF21BO75037 1637 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 STK11IPQ8N1F8 1099 aa21.53■■□□□ 1.04
COL18A1-202ENST00000355480 WWC2Q6AWC2 1192 aa21.52■■□□□ 1.04
COL18A1-202ENST00000355480 CCT4P50991 539 aaKnown RBP21.52■■□□□ 1.04
COL18A1-202ENST00000355480 RNF214Q8ND24 703 aa21.52■■□□□ 1.04
COL18A1-202ENST00000355480 SRCIN1Q9C0H9 1055 aa21.52■■□□□ 1.04
COL18A1-202ENST00000355480 ARGLU1Q9NWB6 273 aaPredicted RBP21.52■■□□□ 1.04
COL18A1-202ENST00000355480 TTLL5Q6EMB2 1281 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 MPHOSPH8Q99549 860 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 NACAP1Q9BZK3 213 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 PRDM11Q9NQV5 511 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 HFM1A2PYH4 1435 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 CAGE1Q8TC20 777 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 MCM2P49736 904 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 ANKLE2Q86XL3 938 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 SLC26A8Q96RN1 970 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 FAM13BQ9NYF5 915 aa21.51■■□□□ 1.03
COL18A1-202ENST00000355480 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-202ENST00000355480 STK38Q15208 465 aa21.5■■□□□ 1.03
COL18A1-202ENST00000355480 ZNF396Q96N95 335 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-202ENST00000355480 ACBD3Q9H3P7 528 aa21.5■■□□□ 1.03
COL18A1-202ENST00000355480 MAGEC2Q9UBF1 373 aaPredicted RBP21.5■■□□□ 1.03
COL18A1-202ENST00000355480 RTEL1-TNFRSF6BF6WH68 1400 aa21.5■■□□□ 1.03
COL18A1-202ENST00000355480 SLC52A1Q9NWF4 448 aa21.5■■□□□ 1.03
COL18A1-202ENST00000355480 CEBPZQ03701 1054 aaKnown RBP21.49■■□□□ 1.03
COL18A1-202ENST00000355480 CCDC57Q2TAC2 916 aa21.49■■□□□ 1.03
COL18A1-202ENST00000355480 FMNL2Q96PY5 1086 aa21.49■■□□□ 1.03
COL18A1-202ENST00000355480 LRRCC1Q9C099 1032 aa21.49■■□□□ 1.03
COL18A1-202ENST00000355480 BCL11BQ9C0K0 894 aaPredicted RBP21.49■■□□□ 1.03
COL18A1-202ENST00000355480 SMC2O95347 1197 aa21.49■■□□□ 1.03
COL18A1-202ENST00000355480 TRIM5Q9C035 493 aa21.49■■□□□ 1.03
COL18A1-202ENST00000355480 RBM5P52756 815 aaKnown RBP eCLIP21.48■■□□□ 1.034e-7■■□□□ 12.3
COL18A1-202ENST00000355480 RABEP1Q15276 862 aa21.48■■□□□ 1.03
COL18A1-202ENST00000355480 FILIP1LQ4L180 1135 aa21.48■■□□□ 1.03
COL18A1-202ENST00000355480 LETM1O95202 739 aaPredicted RBP21.48■■□□□ 1.03
COL18A1-202ENST00000355480 FAM43AQ8N2R8 423 aa21.47■■□□□ 1.03
COL18A1-202ENST00000355480 NASPP49321 788 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-202ENST00000355480 C9orf84Q5VXU9 1444 aa21.47■■□□□ 1.03
COL18A1-202ENST00000355480 BRPF1P55201 1214 aaPredicted RBP21.47■■□□□ 1.03
COL18A1-202ENST00000355480 CYP46A1Q9Y6A2 500 aa21.47■■□□□ 1.03
COL18A1-202ENST00000355480 CFTRP13569 1480 aa21.47■■□□□ 1.03
COL18A1-202ENST00000355480 PDE3AQ14432 1141 aa21.46■■□□□ 1.03
COL18A1-202ENST00000355480 CAVIN1Q6NZI2 390 aaKnown RBP21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms