RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 CCDC9Q9Y3X0 531 aaKnown RBP21.03■□□□□ 0.96
PRPF40A-201ENST00000354363 ONECUT3O60422 494 aaPredicted RBP21.02■□□□□ 0.96
PRPF40A-201ENST00000354363 PAK3O75914 559 aaPredicted RBP21■□□□□ 0.95
PRPF40A-201ENST00000354363 CDK19Q9BWU1 502 aa21■□□□□ 0.95
PRPF40A-201ENST00000354363 BTG4Q9NY30 223 aa21■□□□□ 0.95
PRPF40A-201ENST00000354363 BLMP54132 1417 aaPredicted RBP20.99■□□□□ 0.95
PRPF40A-201ENST00000354363 NBPF1Q3BBV0 1214 aa20.99■□□□□ 0.95
PRPF40A-201ENST00000354363 PHRF1Q9P1Y6 1649 aaKnown RBP20.98■□□□□ 0.95
PRPF40A-201ENST00000354363 ZRANB1Q9UGI0 708 aa20.96■□□□□ 0.95
PRPF40A-201ENST00000354363 KRT27Q7Z3Y8 459 aa20.96■□□□□ 0.95
PRPF40A-201ENST00000354363 POLR3AO14802 1390 aaPredicted RBP20.95■□□□□ 0.94
PRPF40A-201ENST00000354363 CCDC61Q9Y6R9 512 aa20.95■□□□□ 0.94
PRPF40A-201ENST00000354363 ACEP12821 1306 aa20.94■□□□□ 0.94
PRPF40A-201ENST00000354363 FAM98CQ17RN3 349 aaKnown RBP20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 PRDM11Q9NQV5 511 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 QRICH2Q9H0J4 1663 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 A0A0G2JS52 829 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 PLEKHG3A1L390 1219 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 MYT1Q01538 1121 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 NBPF8Q3BBV2 869 aa20.93■□□□□ 0.94
PRPF40A-201ENST00000354363 SPATA31A5Q5VU36 1347 aa20.91■□□□□ 0.94
PRPF40A-201ENST00000354363 SPATA31A7Q8IWB4 1347 aa20.91■□□□□ 0.94
PRPF40A-201ENST00000354363 DEFB132Q7Z7B7 95 aa20.91■□□□□ 0.94
PRPF40A-201ENST00000354363 KIAA0232Q92628 1395 aa20.91■□□□□ 0.94
PRPF40A-201ENST00000354363 CENPJQ9HC77 1338 aaPredicted RBP20.91■□□□□ 0.94
PRPF40A-201ENST00000354363 THSD7AQ9UPZ6 1657 aa20.9■□□□□ 0.94
PRPF40A-201ENST00000354363 SF3B2Q13435 895 aaKnown RBP20.9■□□□□ 0.94
PRPF40A-201ENST00000354363 NUTM2GQ5VZR2 741 aa20.9■□□□□ 0.94
PRPF40A-201ENST00000354363 SRCAPQ6ZRS2 3230 aa20.89■□□□□ 0.93
PRPF40A-201ENST00000354363 CHRNA2Q15822 529 aa20.88■□□□□ 0.93
PRPF40A-201ENST00000354363 L3MBTL2Q969R5 705 aa20.88■□□□□ 0.93
PRPF40A-201ENST00000354363 NRKQ7Z2Y5 1582 aa20.88■□□□□ 0.93
PRPF40A-201ENST00000354363 ZC3H6P61129 1189 aaKnown RBP20.87■□□□□ 0.93
PRPF40A-201ENST00000354363 SRPK2P78362 688 aaKnown RBP20.87■□□□□ 0.93
PRPF40A-201ENST00000354363 TRPM1Q7Z4N2 1603 aa20.87■□□□□ 0.93
PRPF40A-201ENST00000354363 PPIP5K1Q6PFW1 1433 aa20.86■□□□□ 0.93
PRPF40A-201ENST00000354363 RGPD1P0DJD0 1748 aa20.86■□□□□ 0.93
PRPF40A-201ENST00000354363 CABP2Q9NPB3 220 aa20.86■□□□□ 0.93
PRPF40A-201ENST00000354363 ABTB2Q8N961 1025 aa20.85■□□□□ 0.93
PRPF40A-201ENST00000354363 SPATA31A1Q5TZJ5 1347 aa20.85■□□□□ 0.93
PRPF40A-201ENST00000354363 SIN3AQ96ST3 1273 aa20.84■□□□□ 0.93
PRPF40A-201ENST00000354363 STRN4Q9NRL3 753 aa20.83■□□□□ 0.93
PRPF40A-201ENST00000354363 USP19O94966 1318 aa20.83■□□□□ 0.93
PRPF40A-201ENST00000354363 LMO7Q8WWI1 1683 aa20.83■□□□□ 0.92
PRPF40A-201ENST00000354363 FAM182BQ5T319 152 aa20.82■□□□□ 0.92
PRPF40A-201ENST00000354363 CAMTA1Q9Y6Y1 1673 aa20.81■□□□□ 0.92
PRPF40A-201ENST00000354363 TNS1Q9HBL0 1735 aaKnown RBP20.81■□□□□ 0.92
PRPF40A-201ENST00000354363 BAG6P46379 1132 aa20.81■□□□□ 0.92
PRPF40A-201ENST00000354363 SSH2Q76I76 1423 aa20.8■□□□□ 0.92
PRPF40A-201ENST00000354363 CPDO75976 1380 aa20.8■□□□□ 0.92
PRPF40A-201ENST00000354363 BRD4O60885 1362 aaPredicted RBP20.79■□□□□ 0.92
PRPF40A-201ENST00000354363 NLRP13Q86W25 1043 aa20.79■□□□□ 0.92
PRPF40A-201ENST00000354363 CABP1Q9NZU7 370 aa20.78■□□□□ 0.92
PRPF40A-201ENST00000354363 USP6P35125 1406 aa20.78■□□□□ 0.92
PRPF40A-201ENST00000354363 EVA1CP58658 441 aa20.78■□□□□ 0.92
PRPF40A-201ENST00000354363 NEUROD1Q13562 356 aa20.78■□□□□ 0.92
PRPF40A-201ENST00000354363 GCP02774 474 aa20.77■□□□□ 0.92
PRPF40A-201ENST00000354363 USP35Q9P2H5 1018 aa20.76■□□□□ 0.91
PRPF40A-201ENST00000354363 AKAP12Q02952 1782 aa20.76■□□□□ 0.91
PRPF40A-201ENST00000354363 ROCK2O75116 1388 aaKnown RBP20.76■□□□□ 0.91
PRPF40A-201ENST00000354363 EVC2Q86UK5 1308 aa20.76■□□□□ 0.91
PRPF40A-201ENST00000354363 LARP1Q6PKG0 1096 aaKnown RBP20.75■□□□□ 0.91
PRPF40A-201ENST00000354363 PIK3C2AO00443 1686 aa20.75■□□□□ 0.91
PRPF40A-201ENST00000354363 EN1Q05925 392 aaPredicted RBP20.75■□□□□ 0.91
PRPF40A-201ENST00000354363 BARGINQ6ZT62 677 aa20.75■□□□□ 0.91
PRPF40A-201ENST00000354363 DISP2A7MBM2 1401 aa20.74■□□□□ 0.91
PRPF40A-201ENST00000354363 SLIT3O75094 1523 aa20.74■□□□□ 0.91
PRPF40A-201ENST00000354363 NLRP6P59044 892 aa20.72■□□□□ 0.91
PRPF40A-201ENST00000354363 FAM196AQ6ZSG2 479 aa20.72■□□□□ 0.91
PRPF40A-201ENST00000354363 TCP11L2Q8N4U5 519 aa20.72■□□□□ 0.91
PRPF40A-201ENST00000354363 COL5A2P05997 1499 aaPredicted RBP20.72■□□□□ 0.91
PRPF40A-201ENST00000354363 LRP5O75197 1615 aa20.72■□□□□ 0.91
PRPF40A-201ENST00000354363 COL18A1P39060 1754 aa20.71■□□□□ 0.91
PRPF40A-201ENST00000354363 PARP4Q9UKK3 1724 aaKnown RBP20.71■□□□□ 0.91
PRPF40A-201ENST00000354363 PSDA5PKW4 1024 aaPredicted RBP20.7■□□□□ 0.9
PRPF40A-201ENST00000354363 TRIM37O94972 964 aa20.7■□□□□ 0.9
PRPF40A-201ENST00000354363 RGPD5Q99666 1765 aa20.69■□□□□ 0.9
PRPF40A-201ENST00000354363 ZBTB7CA1YPR0 619 aa20.68■□□□□ 0.9
PRPF40A-201ENST00000354363 PDE3BQ13370 1112 aa20.68■□□□□ 0.9
PRPF40A-201ENST00000354363 THRAP3Q9Y2W1 955 aaKnown RBP20.68■□□□□ 0.9
PRPF40A-201ENST00000354363 AATKQ6ZMQ8 1374 aa20.68■□□□□ 0.9
PRPF40A-201ENST00000354363 CRB1P82279 1406 aa20.67■□□□□ 0.9
PRPF40A-201ENST00000354363 EZH2Q15910 746 aaKnown RBP20.67■□□□□ 0.9
PRPF40A-201ENST00000354363 ZNF692Q9BU19 519 aaPredicted RBP20.67■□□□□ 0.9
PRPF40A-201ENST00000354363 TTC21BQ7Z4L5 1316 aa20.66■□□□□ 0.9
PRPF40A-201ENST00000354363 WNK3Q9BYP7 1800 aa20.65■□□□□ 0.9
PRPF40A-201ENST00000354363 MON2Q7Z3U7 1717 aa20.65■□□□□ 0.9
PRPF40A-201ENST00000354363 CAMKK2Q96RR4 588 aa20.65■□□□□ 0.9
PRPF40A-201ENST00000354363 RREB1Q92766 1687 aa20.65■□□□□ 0.9
PRPF40A-201ENST00000354363 CPSF1Q10570 1443 aaKnown RBP20.65■□□□□ 0.9
PRPF40A-201ENST00000354363 SBF2Q86WG5 1849 aa20.64■□□□□ 0.89
PRPF40A-201ENST00000354363 APBA3O96018 575 aa20.64■□□□□ 0.89
PRPF40A-201ENST00000354363 SBNO2Q9Y2G9 1366 aa20.63■□□□□ 0.89
PRPF40A-201ENST00000354363 LRRC37A3O60309 1634 aa20.62■□□□□ 0.89
PRPF40A-201ENST00000354363 R3HDM1Q15032 1099 aaKnown RBP20.62■□□□□ 0.89
PRPF40A-201ENST00000354363 TTC21AQ8NDW8 1320 aa20.62■□□□□ 0.89
PRPF40A-201ENST00000354363 NUP188Q5SRE5 1749 aa20.62■□□□□ 0.89
PRPF40A-201ENST00000354363 PEAK1Q9H792 1746 aa20.62■□□□□ 0.89
PRPF40A-201ENST00000354363 AXIN2Q9Y2T1 843 aa20.61■□□□□ 0.89
PRPF40A-201ENST00000354363 PARD3Q8TEW0 1356 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms