RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 DDX46Q7L014 1031 aaKnown RBP7.3□□□□□ -1.24
VCAN-203ENST00000343200 SPC24Q8NBT2 197 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 FAM184BQ9ULE4 1060 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 RRP1P56182 461 aaKnown RBP7.3□□□□□ -1.24
VCAN-203ENST00000343200 ZBTB17Q13105 803 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 MSL1Q68DK7 614 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 GBP6Q6ZN66 633 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 ANKRD62A6NC57 917 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 SLC4A3P48751 1232 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 FMNL2Q96PY5 1086 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 CEP83Q9Y592 693 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 FILIP1LQ4L180 1135 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 NAP1L3Q99457 506 aaPredicted RBP7.3□□□□□ -1.24
VCAN-203ENST00000343200 ZFYP08048 801 aaPredicted RBP7.3□□□□□ -1.24
VCAN-203ENST00000343200 NINLQ9Y2I6 1382 aa7.3□□□□□ -1.24
VCAN-203ENST00000343200 SYNE3Q6ZMZ3 975 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 C6orf163Q5TEZ5 329 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 CPLX1O14810 134 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 TRIM34Q9BYJ4 488 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 CBFA2T2O43439 604 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 ZMAT2Q96NC0 199 aaKnown RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 VGFO15240 615 aaPredicted RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 PLEKHD1A6NEE1 506 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 CCDC148Q8NFR7 591 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 DDX23Q9BUQ8 820 aaKnown RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 C22orf23Q9BZE7 217 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 SMC3Q9UQE7 1217 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 LRRFIP2Q9Y608 721 aaKnown RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 ANKRD18BA2A2Z9 1011 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 SH3BGRP55822 239 aaPredicted RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 MAGEC2Q9UBF1 373 aaPredicted RBP7.29□□□□□ -1.24
VCAN-203ENST00000343200 SETD5Q9C0A6 1442 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 LRCH2Q5VUJ6 765 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 FILIP1Q7Z7B0 1213 aa7.29□□□□□ -1.24
VCAN-203ENST00000343200 INTS3Q68E01 1043 aaKnown RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 SDF4Q9BRK5 362 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 GCOM1H8Y6P7 765 aaPredicted RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 MYZAPP0CAP1 466 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 PPFIBP1Q86W92 1011 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 RNF214Q8ND24 703 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 RP1P56715 2156 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 SAFBQ15424 915 aaKnown RBP eCLIP7.28□□□□□ -1.24
VCAN-203ENST00000343200 FBXW7Q969H0 707 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 VPS37CA5D8V6 355 aaPredicted RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 KIF20AO95235 890 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 HSPA5P11021 654 aaKnown RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 MCM2P49736 904 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 DHX37Q8IY37 1157 aaKnown RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 PRIMPOLQ96LW4 560 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 RNF187Q5TA31 235 aaPredicted RBP7.28□□□□□ -1.24
VCAN-203ENST00000343200 GTF2F1P35269 517 aaKnown RBP eCLIP7.28□□□□□ -1.24
VCAN-203ENST00000343200 BRMS1Q9HCU9 246 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 SPAG17Q6Q759 2223 aa7.28□□□□□ -1.24
VCAN-203ENST00000343200 FBLN2P98095 1184 aa7.27□□□□□ -1.24
VCAN-203ENST00000343200 ZFYVE27Q5T4F4 411 aa7.27□□□□□ -1.24
VCAN-203ENST00000343200 CCDC94Q9BW85 323 aaPredicted RBP7.27□□□□□ -1.24
VCAN-203ENST00000343200 RASSF4Q9H2L5 321 aa7.27□□□□□ -1.24
VCAN-203ENST00000343200 RB1CC1Q8TDY2 1594 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 MORC1Q86VD1 984 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 JAKMIP3Q5VZ66 844 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 PDE4DIPQ5VU43 2346 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 RRP7BPQ9NSQ0 103 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 ZWINTO95229 277 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 SYCP1Q15431 976 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 ANKRD30AQ9BXX3 1397 aa7.27□□□□□ -1.25
VCAN-203ENST00000343200 NOL3O60936 208 aaKnown RBP7.26□□□□□ -1.25
VCAN-203ENST00000343200 STIM1Q13586 685 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 MYCBPQ99417 103 aaPredicted RBP7.26□□□□□ -1.25
VCAN-203ENST00000343200 PLCD3Q8N3E9 789 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 PAXBP1Q9Y5B6 917 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 MYO7AQ13402 2215 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 ANO2Q9NQ90 1003 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 ARID4AP29374 1257 aaPredicted RBP7.26□□□□□ -1.25
VCAN-203ENST00000343200 LMAN1P49257 510 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 NUP133Q8WUM0 1156 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 CCDC43Q96MW1 224 aaKnown RBP7.26□□□□□ -1.25
VCAN-203ENST00000343200 ICE1Q9Y2F5 2266 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 CASQ1P31415 396 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 IMMTQ16891 758 aaKnown RBP7.26□□□□□ -1.25
VCAN-203ENST00000343200 DACH1Q9UI36 760 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 CCDC160A6NGH7 325 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 PTPN14Q15678 1187 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 RILPL2Q969X0 211 aa7.26□□□□□ -1.25
VCAN-203ENST00000343200 ZSCAN12O43309 604 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 CCDC50Q8IVM0 306 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 SMAP1Q8IYB5 467 aaPredicted RBP7.25□□□□□ -1.25
VCAN-203ENST00000343200 FRAT2O75474 233 aaPredicted RBP7.25□□□□□ -1.25
VCAN-203ENST00000343200 SERPINC1P01008 464 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 NAA25Q14CX7 972 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 ANKRD45Q5TZF3 282 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 JMYQ8N9B5 988 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 TNMDQ9H2S6 317 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 CCDC6Q16204 474 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 NLRP13Q86W25 1043 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 KANK1Q14678 1352 aa7.25□□□□□ -1.25
VCAN-203ENST00000343200 KRI1Q8N9T8 703 aaKnown RBP7.25□□□□□ -1.25
VCAN-203ENST00000343200 PPP1R12BO60237 982 aaPredicted RBP7.24□□□□□ -1.25
VCAN-203ENST00000343200 BMS1Q14692 1282 aaKnown RBP7.24□□□□□ -1.25
VCAN-203ENST00000343200 CWC22Q9HCG8 908 aaKnown RBP7.24□□□□□ -1.25
VCAN-203ENST00000343200 ARHGAP29Q52LW3 1261 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms