RNA–Protein interactions for RNA: ENST00000340647.8

BRCC3-202, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS P2 TSL 2 BASIC

Gene BRCC3, Length 1,101 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-202ENST00000340647 NGDNQ8NEJ9 315 aaKnown RBP24.58■■□□□ 1.53
BRCC3-202ENST00000340647 PLEKHG3A1L390 1219 aa24.57■■□□□ 1.52
BRCC3-202ENST00000340647 FAM83GA6ND36 823 aa24.57■■□□□ 1.52
BRCC3-202ENST00000340647 UNC5CLQ8IV45 518 aa24.57■■□□□ 1.52
BRCC3-202ENST00000340647 CCDC61Q9Y6R9 512 aa24.57■■□□□ 1.52
BRCC3-202ENST00000340647 GJD4Q96KN9 370 aaPredicted RBP24.56■■□□□ 1.52
BRCC3-202ENST00000340647 RALGAPBQ86X10 1494 aa24.56■■□□□ 1.52
BRCC3-202ENST00000340647 ACEP12821 1306 aa24.56■■□□□ 1.52
BRCC3-202ENST00000340647 BRWD3Q6RI45 1802 aa24.56■■□□□ 1.52
BRCC3-202ENST00000340647 PHRF1Q9P1Y6 1649 aaKnown RBP24.55■■□□□ 1.52
BRCC3-202ENST00000340647 CABP2Q9NPB3 220 aa24.54■■□□□ 1.52
BRCC3-202ENST00000340647 ATAD2Q6PL18 1390 aa24.54■■□□□ 1.52
BRCC3-202ENST00000340647 ROCK2O75116 1388 aaKnown RBP24.52■■□□□ 1.52
BRCC3-202ENST00000340647 COL14A1Q05707 1796 aaKnown RBP24.52■■□□□ 1.52
BRCC3-202ENST00000340647 PPIP5K1Q6PFW1 1433 aa24.51■■□□□ 1.51
BRCC3-202ENST00000340647 PAK3O75914 559 aaPredicted RBP24.49■■□□□ 1.51
BRCC3-202ENST00000340647 HAP1P54257 671 aaPredicted RBP24.49■■□□□ 1.51
BRCC3-202ENST00000340647 SRPK2P78362 688 aaKnown RBP24.48■■□□□ 1.51
BRCC3-202ENST00000340647 VPS72Q15906 364 aa24.47■■□□□ 1.51
BRCC3-202ENST00000340647 NUTM2GQ5VZR2 741 aa24.45■■□□□ 1.5
BRCC3-202ENST00000340647 NRKQ7Z2Y5 1582 aa24.45■■□□□ 1.5
BRCC3-202ENST00000340647 AKAP12Q02952 1782 aa24.44■■□□□ 1.5
BRCC3-202ENST00000340647 CABP1Q9NZU7 370 aa24.44■■□□□ 1.5
BRCC3-202ENST00000340647 SSH2Q76I76 1423 aa24.44■■□□□ 1.5
BRCC3-202ENST00000340647 ONECUT3O60422 494 aaPredicted RBP24.43■■□□□ 1.5
BRCC3-202ENST00000340647 BTG4Q9NY30 223 aa24.43■■□□□ 1.5
BRCC3-202ENST00000340647 KIAA0232Q92628 1395 aa24.41■■□□□ 1.5
BRCC3-202ENST00000340647 TONSLQ96HA7 1378 aa24.41■■□□□ 1.5
BRCC3-202ENST00000340647 USP19O94966 1318 aa24.4■■□□□ 1.5
BRCC3-202ENST00000340647 USP6P35125 1406 aa24.4■■□□□ 1.5
BRCC3-202ENST00000340647 PIK3C2AO00443 1686 aa24.4■■□□□ 1.5
BRCC3-202ENST00000340647 EVC2Q86UK5 1308 aa24.39■■□□□ 1.5
BRCC3-202ENST00000340647 LMO7Q8WWI1 1683 aa24.39■■□□□ 1.49
BRCC3-202ENST00000340647 SBNO2Q9Y2G9 1366 aa24.38■■□□□ 1.49
BRCC3-202ENST00000340647 CHRNA2Q15822 529 aa24.37■■□□□ 1.49
BRCC3-202ENST00000340647 SEPT12Q8IYM1 358 aa24.37■■□□□ 1.49
BRCC3-202ENST00000340647 ABTB2Q8N961 1025 aa24.37■■□□□ 1.49
BRCC3-202ENST00000340647 ZC3H6P61129 1189 aaKnown RBP24.36■■□□□ 1.49
BRCC3-202ENST00000340647 CARD11Q9BXL7 1154 aa24.36■■□□□ 1.49
BRCC3-202ENST00000340647 PRDM11Q9NQV5 511 aa24.36■■□□□ 1.49
BRCC3-202ENST00000340647 CAMTA1Q9Y6Y1 1673 aa24.36■■□□□ 1.49
BRCC3-202ENST00000340647 ZRANB1Q9UGI0 708 aa24.35■■□□□ 1.49
BRCC3-202ENST00000340647 THSD7AQ9UPZ6 1657 aa24.34■■□□□ 1.49
BRCC3-202ENST00000340647 BRD4O60885 1362 aaPredicted RBP24.34■■□□□ 1.49
BRCC3-202ENST00000340647 CCDC125Q86Z20 511 aa24.34■■□□□ 1.49
BRCC3-202ENST00000340647 CPSF1Q10570 1443 aaKnown RBP24.34■■□□□ 1.49
BRCC3-202ENST00000340647 SPATA31A5Q5VU36 1347 aa24.34■■□□□ 1.49
BRCC3-202ENST00000340647 SPATA31A7Q8IWB4 1347 aa24.34■■□□□ 1.49
BRCC3-202ENST00000340647 MON2Q7Z3U7 1717 aa24.33■■□□□ 1.49
BRCC3-202ENST00000340647 SLIT3O75094 1523 aa24.33■■□□□ 1.49
BRCC3-202ENST00000340647 CPDO75976 1380 aa24.32■■□□□ 1.48
BRCC3-202ENST00000340647 COL18A1P39060 1754 aa24.32■■□□□ 1.48
BRCC3-202ENST00000340647 CCDC9Q9Y3X0 531 aaKnown RBP24.32■■□□□ 1.48
BRCC3-202ENST00000340647 CD163L1Q9NR16 1453 aa24.32■■□□□ 1.48
BRCC3-202ENST00000340647 GCP02774 474 aa24.3■■□□□ 1.48
BRCC3-202ENST00000340647 FAM98CQ17RN3 349 aaKnown RBP24.3■■□□□ 1.48
BRCC3-202ENST00000340647 NLRP13Q86W25 1043 aa24.29■■□□□ 1.48
BRCC3-202ENST00000340647 SPATA31A1Q5TZJ5 1347 aa24.28■■□□□ 1.48
BRCC3-202ENST00000340647 TESK2Q96S53 571 aa24.27■■□□□ 1.48
BRCC3-202ENST00000340647 TTC21BQ7Z4L5 1316 aa24.27■■□□□ 1.48
BRCC3-202ENST00000340647 RGPD5Q99666 1765 aa24.26■■□□□ 1.47
BRCC3-202ENST00000340647 NLRP6P59044 892 aa24.25■■□□□ 1.47
BRCC3-202ENST00000340647 KRT27Q7Z3Y8 459 aa24.25■■□□□ 1.47
BRCC3-202ENST00000340647 BLMP54132 1417 aaPredicted RBP24.25■■□□□ 1.47
BRCC3-202ENST00000340647 ZNF692Q9BU19 519 aaPredicted RBP24.24■■□□□ 1.47
BRCC3-202ENST00000340647 USP54Q70EL1 1684 aa24.24■■□□□ 1.47
BRCC3-202ENST00000340647 DEFB132Q7Z7B7 95 aa24.23■■□□□ 1.47
BRCC3-202ENST00000340647 STRN4Q9NRL3 753 aa24.23■■□□□ 1.47
BRCC3-202ENST00000340647 COL5A2P05997 1499 aaPredicted RBP24.22■■□□□ 1.47
BRCC3-202ENST00000340647 LARP1Q6PKG0 1096 aaKnown RBP24.22■■□□□ 1.47
BRCC3-202ENST00000340647 ST20-MTHFSA0A0A6YYL1 179 aa24.21■■□□□ 1.47
BRCC3-202ENST00000340647 NFAT5O94916 1531 aa24.2■■□□□ 1.47
BRCC3-202ENST00000340647 KTN1Q86UP2 1357 aaKnown RBP24.2■■□□□ 1.46
BRCC3-202ENST00000340647 FAM182BQ5T319 152 aa24.2■■□□□ 1.46
BRCC3-202ENST00000340647 SLC12A5Q9H2X9 1139 aa24.2■■□□□ 1.46
BRCC3-202ENST00000340647 AATKQ6ZMQ8 1374 aa24.18■■□□□ 1.46
BRCC3-202ENST00000340647 TTC21AQ8NDW8 1320 aa24.18■■□□□ 1.46
BRCC3-202ENST00000340647 AXIN2Q9Y2T1 843 aa24.18■■□□□ 1.46
BRCC3-202ENST00000340647 ARHGEF25Q86VW2 580 aa24.16■■□□□ 1.46
BRCC3-202ENST00000340647 PUS7Q96PZ0 661 aaKnown RBP24.16■■□□□ 1.46
BRCC3-202ENST00000340647 TNS1Q9HBL0 1735 aaKnown RBP24.15■■□□□ 1.46
BRCC3-202ENST00000340647 BARGINQ6ZT62 677 aa24.15■■□□□ 1.46
BRCC3-202ENST00000340647 USP35Q9P2H5 1018 aa24.15■■□□□ 1.46
BRCC3-202ENST00000340647 A0A1W2PP64 1363 aa24.15■■□□□ 1.46
BRCC3-202ENST00000340647 USP31Q70CQ4 1352 aa24.15■■□□□ 1.46
BRCC3-202ENST00000340647 A0A0G2JS52 829 aa24.14■■□□□ 1.45
BRCC3-202ENST00000340647 EVA1CP58658 441 aa24.14■■□□□ 1.45
BRCC3-202ENST00000340647 MYT1Q01538 1121 aa24.14■■□□□ 1.45
BRCC3-202ENST00000340647 PARP4Q9UKK3 1724 aaKnown RBP24.14■■□□□ 1.45
BRCC3-202ENST00000340647 WNK3Q9BYP7 1800 aa24.14■■□□□ 1.45
BRCC3-202ENST00000340647 NME9Q86XW9 330 aa24.13■■□□□ 1.45
BRCC3-202ENST00000340647 PCGF6Q9BYE7 350 aa24.13■■□□□ 1.45
BRCC3-202ENST00000340647 RGPD1P0DJD0 1748 aa24.13■■□□□ 1.45
BRCC3-202ENST00000340647 LTN1O94822 1766 aa24.12■■□□□ 1.45
BRCC3-202ENST00000340647 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.12■■□□□ 1.45
BRCC3-202ENST00000340647 TMC1Q8TDI8 760 aa24.12■■□□□ 1.45
BRCC3-202ENST00000340647 USP47Q96K76 1375 aa24.11■■□□□ 1.45
BRCC3-202ENST00000340647 CRB1P82279 1406 aa24.1■■□□□ 1.45
BRCC3-202ENST00000340647 ZBTB7CA1YPR0 619 aa24.1■■□□□ 1.45
BRCC3-202ENST00000340647 TCP11L2Q8N4U5 519 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms