RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 TRPM3Q9HCF6 1732 aaPredicted RBP21.94■■□□□ 1.1
VAPA-201ENST00000340541 GLI3P10071 1580 aa21.93■■□□□ 1.1
VAPA-201ENST00000340541 CARD11Q9BXL7 1154 aa21.93■■□□□ 1.1
VAPA-201ENST00000340541 NWD2Q9ULI1 1742 aa21.92■■□□□ 1.1
VAPA-201ENST00000340541 FAM83GA6ND36 823 aa21.91■■□□□ 1.1
VAPA-201ENST00000340541 ZRANB1Q9UGI0 708 aa21.91■■□□□ 1.1
VAPA-201ENST00000340541 TIMELESSQ9UNS1 1208 aa21.91■■□□□ 1.1
VAPA-201ENST00000340541 EP400Q96L91 3159 aa21.91■■□□□ 1.1
VAPA-201ENST00000340541 CCDC61Q9Y6R9 512 aa21.9■■□□□ 1.1
VAPA-201ENST00000340541 SEPT12Q8IYM1 358 aa21.89■■□□□ 1.09
VAPA-201ENST00000340541 CABP2Q9NPB3 220 aa21.89■■□□□ 1.09
VAPA-201ENST00000340541 SBNO2Q9Y2G9 1366 aa21.88■■□□□ 1.09
VAPA-201ENST00000340541 SRPK2P78362 688 aaKnown RBP21.88■■□□□ 1.09
VAPA-201ENST00000340541 CCER1Q8TC90 406 aaPredicted RBP21.88■■□□□ 1.09
VAPA-201ENST00000340541 ALS2Q96Q42 1657 aa21.88■■□□□ 1.09
VAPA-201ENST00000340541 BLMP54132 1417 aaPredicted RBP21.88■■□□□ 1.09
VAPA-201ENST00000340541 POLR3AO14802 1390 aaPredicted RBP21.87■■□□□ 1.09
VAPA-201ENST00000340541 ABCA3Q99758 1704 aa21.87■■□□□ 1.09
VAPA-201ENST00000340541 PLEKHG3A1L390 1219 aa21.87■■□□□ 1.09
VAPA-201ENST00000340541 NGDNQ8NEJ9 315 aaKnown RBP21.87■■□□□ 1.09
VAPA-201ENST00000340541 PLCH1Q4KWH8 1693 aa21.86■■□□□ 1.09
VAPA-201ENST00000340541 CCDC9Q9Y3X0 531 aaKnown RBP21.86■■□□□ 1.09
VAPA-201ENST00000340541 EVC2Q86UK5 1308 aa21.85■■□□□ 1.09
VAPA-201ENST00000340541 PPIP5K1Q6PFW1 1433 aa21.85■■□□□ 1.09
VAPA-201ENST00000340541 ACEP12821 1306 aa21.83■■□□□ 1.09
VAPA-201ENST00000340541 PLEKHG5O94827 1062 aa21.83■■□□□ 1.09
VAPA-201ENST00000340541 KRT27Q7Z3Y8 459 aa21.83■■□□□ 1.09
VAPA-201ENST00000340541 SF3B2Q13435 895 aaKnown RBP21.82■■□□□ 1.08
VAPA-201ENST00000340541 BTG4Q9NY30 223 aa21.82■■□□□ 1.08
VAPA-201ENST00000340541 BRWD3Q6RI45 1802 aa21.82■■□□□ 1.08
VAPA-201ENST00000340541 COL14A1Q05707 1796 aaKnown RBP21.81■■□□□ 1.08
VAPA-201ENST00000340541 PAK3O75914 559 aaPredicted RBP21.8■■□□□ 1.08
VAPA-201ENST00000340541 CRYBG1Q9Y4K1 1723 aa21.8■■□□□ 1.08
VAPA-201ENST00000340541 CABP1Q9NZU7 370 aa21.79■■□□□ 1.08
VAPA-201ENST00000340541 TESK2Q96S53 571 aa21.78■■□□□ 1.08
VAPA-201ENST00000340541 ST20-MTHFSA0A0A6YYL1 179 aa21.77■■□□□ 1.08
VAPA-201ENST00000340541 NRAPQ86VF7 1730 aa21.77■■□□□ 1.08
VAPA-201ENST00000340541 SPATA31A5Q5VU36 1347 aa21.76■■□□□ 1.07
VAPA-201ENST00000340541 SPATA31A7Q8IWB4 1347 aa21.76■■□□□ 1.07
VAPA-201ENST00000340541 USP47Q96K76 1375 aa21.75■■□□□ 1.07
VAPA-201ENST00000340541 FAM98CQ17RN3 349 aaKnown RBP21.75■■□□□ 1.07
VAPA-201ENST00000340541 PRDM11Q9NQV5 511 aa21.75■■□□□ 1.07
VAPA-201ENST00000340541 SRCAPQ6ZRS2 3230 aa21.74■■□□□ 1.07
VAPA-201ENST00000340541 USP6P35125 1406 aa21.74■■□□□ 1.07
VAPA-201ENST00000340541 AKAP12Q02952 1782 aa21.74■■□□□ 1.07
VAPA-201ENST00000340541 SSH2Q76I76 1423 aa21.73■■□□□ 1.07
VAPA-201ENST00000340541 A0A0G2JS52 829 aa21.72■■□□□ 1.07
VAPA-201ENST00000340541 MYT1Q01538 1121 aa21.72■■□□□ 1.07
VAPA-201ENST00000340541 DEFB132Q7Z7B7 95 aa21.72■■□□□ 1.07
VAPA-201ENST00000340541 BRD4O60885 1362 aaPredicted RBP21.72■■□□□ 1.07
VAPA-201ENST00000340541 CPSF1Q10570 1443 aaKnown RBP21.71■■□□□ 1.07
VAPA-201ENST00000340541 PHRF1Q9P1Y6 1649 aaKnown RBP21.7■■□□□ 1.06
VAPA-201ENST00000340541 BAG6P46379 1132 aa21.7■■□□□ 1.06
VAPA-201ENST00000340541 CD163L1Q9NR16 1453 aa21.7■■□□□ 1.06
VAPA-201ENST00000340541 PUS7Q96PZ0 661 aaKnown RBP21.69■■□□□ 1.06
VAPA-201ENST00000340541 KIAA0232Q92628 1395 aa21.69■■□□□ 1.06
VAPA-201ENST00000340541 NRKQ7Z2Y5 1582 aa21.69■■□□□ 1.06
VAPA-201ENST00000340541 SPATA31A1Q5TZJ5 1347 aa21.68■■□□□ 1.06
VAPA-201ENST00000340541 MON2Q7Z3U7 1717 aa21.68■■□□□ 1.06
VAPA-201ENST00000340541 NUTM2GQ5VZR2 741 aa21.67■■□□□ 1.06
VAPA-201ENST00000340541 ABTB2Q8N961 1025 aa21.67■■□□□ 1.06
VAPA-201ENST00000340541 ZC3H6P61129 1189 aaKnown RBP21.66■■□□□ 1.06
VAPA-201ENST00000340541 PIK3C2AO00443 1686 aa21.66■■□□□ 1.06
VAPA-201ENST00000340541 USP19O94966 1318 aa21.65■■□□□ 1.06
VAPA-201ENST00000340541 NLRP13Q86W25 1043 aa21.65■■□□□ 1.06
VAPA-201ENST00000340541 ZNF692Q9BU19 519 aaPredicted RBP21.65■■□□□ 1.06
VAPA-201ENST00000340541 THSD7AQ9UPZ6 1657 aa21.64■■□□□ 1.05
VAPA-201ENST00000340541 SLC24A1O60721 1099 aa21.64■■□□□ 1.05
VAPA-201ENST00000340541 CHRNA2Q15822 529 aa21.64■■□□□ 1.05
VAPA-201ENST00000340541 SLC12A5Q9H2X9 1139 aa21.64■■□□□ 1.05
VAPA-201ENST00000340541 CPDO75976 1380 aa21.63■■□□□ 1.05
VAPA-201ENST00000340541 EVA1CP58658 441 aa21.63■■□□□ 1.05
VAPA-201ENST00000340541 BARGINQ6ZT62 677 aa21.63■■□□□ 1.05
VAPA-201ENST00000340541 KTN1Q86UP2 1357 aaKnown RBP21.62■■□□□ 1.05
VAPA-201ENST00000340541 TTC21BQ7Z4L5 1316 aa21.62■■□□□ 1.05
VAPA-201ENST00000340541 FAM196AQ6ZSG2 479 aa21.61■■□□□ 1.05
VAPA-201ENST00000340541 TMC1Q8TDI8 760 aa21.61■■□□□ 1.05
VAPA-201ENST00000340541 STRN4Q9NRL3 753 aa21.61■■□□□ 1.05
VAPA-201ENST00000340541 SLIT3O75094 1523 aa21.6■■□□□ 1.05
VAPA-201ENST00000340541 GCP02774 474 aa21.6■■□□□ 1.05
VAPA-201ENST00000340541 TMF1P82094 1093 aa21.6■■□□□ 1.05
VAPA-201ENST00000340541 DISP2A7MBM2 1401 aa21.6■■□□□ 1.05
VAPA-201ENST00000340541 RGPD1P0DJD0 1748 aa21.6■■□□□ 1.05
VAPA-201ENST00000340541 THRAP3Q9Y2W1 955 aaKnown RBP21.59■■□□□ 1.05
VAPA-201ENST00000340541 A0A1W2PP64 1363 aa21.59■■□□□ 1.05
VAPA-201ENST00000340541 NINLQ9Y2I6 1382 aa21.59■■□□□ 1.05
VAPA-201ENST00000340541 TTC21AQ8NDW8 1320 aa21.58■■□□□ 1.05
VAPA-201ENST00000340541 NLRP6P59044 892 aa21.58■■□□□ 1.05
VAPA-201ENST00000340541 EN1Q05925 392 aaPredicted RBP21.57■■□□□ 1.04
VAPA-201ENST00000340541 FAM182BQ5T319 152 aa21.57■■□□□ 1.04
VAPA-201ENST00000340541 CAMTA1Q9Y6Y1 1673 aa21.56■■□□□ 1.04
VAPA-201ENST00000340541 TCP11L2Q8N4U5 519 aa21.56■■□□□ 1.04
VAPA-201ENST00000340541 USP54Q70EL1 1684 aa21.56■■□□□ 1.04
VAPA-201ENST00000340541 C11orf95C9JLR9 678 aaPredicted RBP21.55■■□□□ 1.04
VAPA-201ENST00000340541 PDE3BQ13370 1112 aa21.55■■□□□ 1.04
VAPA-201ENST00000340541 HDGFL2Q7Z4V5 671 aaPredicted RBP21.55■■□□□ 1.04
VAPA-201ENST00000340541 TERF2IPQ9NYB0 399 aa21.55■■□□□ 1.04
VAPA-201ENST00000340541 EDC4Q6P2E9 1401 aaKnown RBP21.55■■□□□ 1.04
VAPA-201ENST00000340541 LMO7Q8WWI1 1683 aa21.54■■□□□ 1.04
VAPA-201ENST00000340541 LARP1Q6PKG0 1096 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms