RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 K7ELQ4 463 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 CCDC192P0DO97 292 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 HOMER1Q86YM7 354 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 ZNF396Q96N95 335 aaPredicted RBP12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 MCM5P33992 734 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 OLFM4Q6UX06 510 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 TCP11L2Q8N4U5 519 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 SLC52A1Q9NWF4 448 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 VSIG10Q8N0Z9 540 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 SHANK2Q9UPX8 1470 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 XBP1P17861 261 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 PANK1Q8TE04 598 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 FAM13BQ9NYF5 915 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 KINO60870 393 aaKnown RBP12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 FKBP5Q13451 457 aaPredicted RBP12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 IFT57Q9NWB7 429 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 MYO6Q9UM54 1294 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 LRPPRCP42704 1394 aaKnown RBP12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 BRMS1Q9HCU9 246 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 ATF7IPQ6VMQ6 1270 aa12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 UBTFL1P0CB47 393 aaPredicted RBP12.34□□□□□ -0.43
CCDC88A-202ENST00000336838 PRG4Q92954 1404 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 MNS1Q8NEH6 495 aa12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 ALDH1L2Q3SY69 923 aa12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 ASXL1Q8IXJ9 1541 aa12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 LNPKQ9C0E8 428 aa12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 INSRP06213 1382 aa12.33□□□□□ -0.44
CCDC88A-202ENST00000336838 SLC4A3P48751 1232 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 SCAF11Q99590 1463 aaKnown RBP12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 DUOX2Q9NRD8 1548 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 NOL8Q76FK4 1167 aaKnown RBP12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 GRPEL1Q9HAV7 217 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 ERICH2A1L162 156 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 GNAI2P04899 355 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 CAVIN2O95810 425 aa12.32□□□□□ -0.44
CCDC88A-202ENST00000336838 CALRP27797 417 aaKnown RBP12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 RUFY1Q96T51 708 aa12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 CLASRPQ8N2M8 674 aaKnown RBP12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 TCOF1Q13428 1488 aaKnown RBP12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 ZNF692Q9BU19 519 aaPredicted RBP12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 ZNF644Q9H582 1327 aaPredicted RBP12.31□□□□□ -0.44
CCDC88A-202ENST00000336838 MTHFSP49914 203 aa12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 MLECQ14165 292 aa12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 RALYLQ86SE5 291 aaKnown RBP12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 TSPYL4Q9UJ04 414 aa12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 KDM5AP29375 1690 aaKnown RBP12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 MINK1Q8N4C8 1332 aaPredicted RBP12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 DCTN1Q14203 1278 aa12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 ZSCAN31Q96LW9 406 aaPredicted RBP12.3□□□□□ -0.44
CCDC88A-202ENST00000336838 VPS37CA5D8V6 355 aaPredicted RBP12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 ABCC5O15440 1437 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 FCHSD2O94868 740 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 NOL10Q9BSC4 688 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 DACH1Q9UI36 760 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 SART3Q15020 963 aaKnown RBP12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 PDZRN3Q9UPQ7 1066 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 SMARCE1Q969G3 411 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 IQCEQ6IPM2 695 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 KRT32Q14532 448 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 CFAP45Q9UL16 551 aa12.29□□□□□ -0.44
CCDC88A-202ENST00000336838 GRIN2AQ12879 1464 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 MCM4P33991 863 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 SLFN5Q08AF3 891 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 ZSCAN30Q86W11 494 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 TAOK2Q9UL54 1235 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 CHD1LQ86WJ1 897 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 FRAT2O75474 233 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 ESPNB1AK53 854 aa12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 POLR1AO95602 1720 aaPredicted RBP12.28□□□□□ -0.44
CCDC88A-202ENST00000336838 PLEKHG5O94827 1062 aa12.27□□□□□ -0.44
CCDC88A-202ENST00000336838 LUC7LQ9NQ29 371 aaKnown RBP12.27□□□□□ -0.44
CCDC88A-202ENST00000336838 KRT85P78386 507 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 CBFA2T2O43439 604 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 CLSTN1O94985 981 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 ZNF592Q92610 1267 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 TRIM5Q9C035 493 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 IL16Q14005 1332 aa12.27□□□□□ -0.45
CCDC88A-202ENST00000336838 RPAP2Q8IXW5 612 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 LRRCC1Q9C099 1032 aa12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 RDXP35241 583 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 KIF1BO60333 1816 aa12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 FOXD4L5Q5VV16 416 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 FOXD4L4Q8WXT5 416 aaPredicted RBP12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 TSPYL1Q9H0U9 437 aa12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 CCAR2Q8N163 923 aaKnown RBP12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 CYP46A1Q9Y6A2 500 aa12.26□□□□□ -0.45
CCDC88A-202ENST00000336838 CDKL5O76039 1030 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 TWISTNBQ3B726 338 aaPredicted RBP12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 SDF4Q9BRK5 362 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 TEX14Q8IWB6 1497 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 NEK4P51957 841 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 UHRF1BP1Q6BDS2 1440 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 NSD3Q9BZ95 1437 aa12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 PES1O00541 588 aaKnown RBP12.25□□□□□ -0.45
CCDC88A-202ENST00000336838 EIF3JO75822 258 aaKnown RBP12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 MARCH6O60337 910 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 ERLIN1O75477 346 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 ARID3AQ99856 593 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 TOMM22Q9NS69 142 aa12.24□□□□□ -0.45
CCDC88A-202ENST00000336838 PPP6R1Q9UPN7 881 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 140.8 ms