RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 ONECUT3O60422 494 aaPredicted RBP25.46■■□□□ 1.67
HDDC3-201ENST00000330334 PLEKHG5O94827 1062 aa25.46■■□□□ 1.67
HDDC3-201ENST00000330334 NWD2Q9ULI1 1742 aa25.46■■□□□ 1.67
HDDC3-201ENST00000330334 SRPK2P78362 688 aaKnown RBP25.44■■□□□ 1.66
HDDC3-201ENST00000330334 GLI3P10071 1580 aa25.43■■□□□ 1.66
HDDC3-201ENST00000330334 TOPAZ1Q8N9V7 1692 aa25.42■■□□□ 1.66
HDDC3-201ENST00000330334 ROCK2O75116 1388 aaKnown RBP25.42■■□□□ 1.66
HDDC3-201ENST00000330334 EP400Q96L91 3159 aa25.42■■□□□ 1.66
HDDC3-201ENST00000330334 TRIM26Q12899 539 aaPredicted RBP25.41■■□□□ 1.66
HDDC3-201ENST00000330334 CCDC125Q86Z20 511 aa25.41■■□□□ 1.66
HDDC3-201ENST00000330334 CABP2Q9NPB3 220 aa25.41■■□□□ 1.66
HDDC3-201ENST00000330334 BTG4Q9NY30 223 aa25.41■■□□□ 1.66
HDDC3-201ENST00000330334 TRPM1Q7Z4N2 1603 aa25.41■■□□□ 1.66
HDDC3-201ENST00000330334 BRD4O60885 1362 aaPredicted RBP25.4■■□□□ 1.66
HDDC3-201ENST00000330334 PLCH1Q4KWH8 1693 aa25.39■■□□□ 1.66
HDDC3-201ENST00000330334 EVC2Q86UK5 1308 aa25.38■■□□□ 1.65
HDDC3-201ENST00000330334 PPIP5K1Q6PFW1 1433 aa25.38■■□□□ 1.65
HDDC3-201ENST00000330334 COL14A1Q05707 1796 aaKnown RBP25.37■■□□□ 1.65
HDDC3-201ENST00000330334 SEPT12Q8IYM1 358 aa25.37■■□□□ 1.65
HDDC3-201ENST00000330334 PRDM11Q9NQV5 511 aa25.37■■□□□ 1.65
HDDC3-201ENST00000330334 CCDC9Q9Y3X0 531 aaKnown RBP25.37■■□□□ 1.65
HDDC3-201ENST00000330334 ABTB2Q8N961 1025 aa25.36■■□□□ 1.65
HDDC3-201ENST00000330334 CRYBG1Q9Y4K1 1723 aa25.36■■□□□ 1.65
HDDC3-201ENST00000330334 QRICH2Q9H0J4 1663 aa25.36■■□□□ 1.65
HDDC3-201ENST00000330334 CABP1Q9NZU7 370 aa25.35■■□□□ 1.65
HDDC3-201ENST00000330334 KIAA0232Q92628 1395 aa25.32■■□□□ 1.64
HDDC3-201ENST00000330334 NLRP13Q86W25 1043 aa25.32■■□□□ 1.64
HDDC3-201ENST00000330334 NRAPQ86VF7 1730 aa25.32■■□□□ 1.64
HDDC3-201ENST00000330334 NUTM2GQ5VZR2 741 aa25.31■■□□□ 1.64
HDDC3-201ENST00000330334 USP19O94966 1318 aa25.31■■□□□ 1.64
HDDC3-201ENST00000330334 SPATA31A5Q5VU36 1347 aa25.31■■□□□ 1.64
HDDC3-201ENST00000330334 SPATA31A7Q8IWB4 1347 aa25.31■■□□□ 1.64
HDDC3-201ENST00000330334 TONSLQ96HA7 1378 aa25.3■■□□□ 1.64
HDDC3-201ENST00000330334 CPDO75976 1380 aa25.29■■□□□ 1.64
HDDC3-201ENST00000330334 SBNO2Q9Y2G9 1366 aa25.29■■□□□ 1.64
HDDC3-201ENST00000330334 ZC3H6P61129 1189 aaKnown RBP25.28■■□□□ 1.64
HDDC3-201ENST00000330334 KRT27Q7Z3Y8 459 aa25.28■■□□□ 1.64
HDDC3-201ENST00000330334 ZNF692Q9BU19 519 aaPredicted RBP25.28■■□□□ 1.64
HDDC3-201ENST00000330334 USP6P35125 1406 aa25.28■■□□□ 1.64
HDDC3-201ENST00000330334 FAM98CQ17RN3 349 aaKnown RBP25.27■■□□□ 1.64
HDDC3-201ENST00000330334 CARD11Q9BXL7 1154 aa25.27■■□□□ 1.64
HDDC3-201ENST00000330334 PHRF1Q9P1Y6 1649 aaKnown RBP25.26■■□□□ 1.63
HDDC3-201ENST00000330334 GCP02774 474 aa25.26■■□□□ 1.63
HDDC3-201ENST00000330334 CHRNA2Q15822 529 aa25.26■■□□□ 1.63
HDDC3-201ENST00000330334 SSH2Q76I76 1423 aa25.26■■□□□ 1.63
HDDC3-201ENST00000330334 BLMP54132 1417 aaPredicted RBP25.25■■□□□ 1.63
HDDC3-201ENST00000330334 SPATA31A1Q5TZJ5 1347 aa25.23■■□□□ 1.63
HDDC3-201ENST00000330334 BRWD3Q6RI45 1802 aa25.23■■□□□ 1.63
HDDC3-201ENST00000330334 NLRP6P59044 892 aa25.21■■□□□ 1.63
HDDC3-201ENST00000330334 NRKQ7Z2Y5 1582 aa25.21■■□□□ 1.63
HDDC3-201ENST00000330334 A0A0G2JS52 829 aa25.2■■□□□ 1.62
HDDC3-201ENST00000330334 EVA1CP58658 441 aa25.2■■□□□ 1.62
HDDC3-201ENST00000330334 MYT1Q01538 1121 aa25.2■■□□□ 1.62
HDDC3-201ENST00000330334 STRN4Q9NRL3 753 aa25.19■■□□□ 1.62
HDDC3-201ENST00000330334 CPSF1Q10570 1443 aaKnown RBP25.19■■□□□ 1.62
HDDC3-201ENST00000330334 PUS7Q96PZ0 661 aaKnown RBP25.18■■□□□ 1.62
HDDC3-201ENST00000330334 TTC21BQ7Z4L5 1316 aa25.17■■□□□ 1.62
HDDC3-201ENST00000330334 SF3B2Q13435 895 aaKnown RBP25.17■■□□□ 1.62
HDDC3-201ENST00000330334 BARGINQ6ZT62 677 aa25.17■■□□□ 1.62
HDDC3-201ENST00000330334 CAMTA1Q9Y6Y1 1673 aa25.17■■□□□ 1.62
HDDC3-201ENST00000330334 TTC21AQ8NDW8 1320 aa25.16■■□□□ 1.62
HDDC3-201ENST00000330334 ZRANB1Q9UGI0 708 aa25.15■■□□□ 1.62
HDDC3-201ENST00000330334 LMO7Q8WWI1 1683 aa25.14■■□□□ 1.62
HDDC3-201ENST00000330334 THSD7AQ9UPZ6 1657 aa25.14■■□□□ 1.62
HDDC3-201ENST00000330334 SLIT3O75094 1523 aa25.14■■□□□ 1.62
HDDC3-201ENST00000330334 SLC24A1O60721 1099 aa25.14■■□□□ 1.62
HDDC3-201ENST00000330334 AATKQ6ZMQ8 1374 aa25.14■■□□□ 1.61
HDDC3-201ENST00000330334 LARP1Q6PKG0 1096 aaKnown RBP25.13■■□□□ 1.61
HDDC3-201ENST00000330334 THRAP3Q9Y2W1 955 aaKnown RBP25.13■■□□□ 1.61
HDDC3-201ENST00000330334 TCP11L2Q8N4U5 519 aa25.12■■□□□ 1.61
HDDC3-201ENST00000330334 KCNH5Q8NCM2 988 aa25.12■■□□□ 1.61
HDDC3-201ENST00000330334 KTN1Q86UP2 1357 aaKnown RBP25.12■■□□□ 1.61
HDDC3-201ENST00000330334 SRCAPQ6ZRS2 3230 aa25.12■■□□□ 1.61
HDDC3-201ENST00000330334 DEFB132Q7Z7B7 95 aa25.1■■□□□ 1.61
HDDC3-201ENST00000330334 PIK3C2AO00443 1686 aa25.1■■□□□ 1.61
HDDC3-201ENST00000330334 AKAP12Q02952 1782 aa25.09■■□□□ 1.61
HDDC3-201ENST00000330334 USP35Q9P2H5 1018 aa25.09■■□□□ 1.61
HDDC3-201ENST00000330334 COL5A2P05997 1499 aaPredicted RBP25.09■■□□□ 1.61
HDDC3-201ENST00000330334 ARHGEF25Q86VW2 580 aa25.08■■□□□ 1.61
HDDC3-201ENST00000330334 FAM196AQ6ZSG2 479 aa25.07■■□□□ 1.6
HDDC3-201ENST00000330334 TESK2Q96S53 571 aa25.07■■□□□ 1.6
HDDC3-201ENST00000330334 BAG6P46379 1132 aa25.06■■□□□ 1.6
HDDC3-201ENST00000330334 TIMELESSQ9UNS1 1208 aa25.06■■□□□ 1.6
HDDC3-201ENST00000330334 CRB1P82279 1406 aa25.05■■□□□ 1.6
HDDC3-201ENST00000330334 CD163L1Q9NR16 1453 aa25.05■■□□□ 1.6
HDDC3-201ENST00000330334 ST20-MTHFSA0A0A6YYL1 179 aa25.05■■□□□ 1.6
HDDC3-201ENST00000330334 HDGFL2Q7Z4V5 671 aaPredicted RBP25.05■■□□□ 1.6
HDDC3-201ENST00000330334 SLC12A5Q9H2X9 1139 aa25.05■■□□□ 1.6
HDDC3-201ENST00000330334 USP31Q70CQ4 1352 aa25.05■■□□□ 1.6
HDDC3-201ENST00000330334 FAM182BQ5T319 152 aa25.04■■□□□ 1.6
HDDC3-201ENST00000330334 TMC1Q8TDI8 760 aa25.04■■□□□ 1.6
HDDC3-201ENST00000330334 TERF2IPQ9NYB0 399 aa25.04■■□□□ 1.6
HDDC3-201ENST00000330334 PDE3BQ13370 1112 aa25.03■■□□□ 1.6
HDDC3-201ENST00000330334 AXIN2Q9Y2T1 843 aa25.03■■□□□ 1.6
HDDC3-201ENST00000330334 CLSPNQ9HAW4 1339 aa25.03■■□□□ 1.6
HDDC3-201ENST00000330334 NINLQ9Y2I6 1382 aa25.02■■□□□ 1.6
HDDC3-201ENST00000330334 ZBTB7CA1YPR0 619 aa25.01■■□□□ 1.59
HDDC3-201ENST00000330334 DISP2A7MBM2 1401 aa25.01■■□□□ 1.59
HDDC3-201ENST00000330334 MON2Q7Z3U7 1717 aa25■■□□□ 1.59
HDDC3-201ENST00000330334 COL18A1P39060 1754 aa25■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms