RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CEP57L1Q8IYX8 460 aa16.92■□□□□ 0.3
COL7A1-201ENST00000328333 NF2P35240 595 aa16.91■□□□□ 0.3
COL7A1-201ENST00000328333 POLA1P09884 1462 aaPredicted RBP16.91■□□□□ 0.3
COL7A1-201ENST00000328333 DESP17661 470 aa16.91■□□□□ 0.3
COL7A1-201ENST00000328333 TTC5Q8N0Z6 440 aa16.91■□□□□ 0.3
COL7A1-201ENST00000328333 TNMDQ9H2S6 317 aa16.91■□□□□ 0.3
COL7A1-201ENST00000328333 CAVIN2O95810 425 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 STK26Q9P289 416 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 KRT85P78386 507 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 IMMTQ16891 758 aaKnown RBP16.9■□□□□ 0.3
COL7A1-201ENST00000328333 SLC3A2P08195 630 aaKnown RBP16.9■□□□□ 0.3
COL7A1-201ENST00000328333 TMCO3Q6UWJ1 677 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 WASHC2AQ641Q2 1341 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 WASHC2CQ9Y4E1 1318 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 TTLL5Q6EMB2 1281 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 UBXN4Q92575 508 aa16.9■□□□□ 0.3
COL7A1-201ENST00000328333 RRBP1Q9P2E9 1410 aaKnown RBP16.9■□□□□ 0.3
COL7A1-201ENST00000328333 ZSCAN12O43309 604 aa16.89■□□□□ 0.3
COL7A1-201ENST00000328333 ERC1Q8IUD2 1116 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 EID1Q9Y6B2 187 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 ZFYVE27Q5T4F4 411 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 NEMFO60524 1076 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 TEFQ10587 303 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 SERPINC1P01008 464 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 EFCAB2Q5VUJ9 269 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 CCDC148Q8NFR7 591 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 KIF18AQ8NI77 898 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 CDKL5O76039 1030 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 CDK5RAP3Q96JB5 506 aa16.89■□□□□ 0.29
COL7A1-201ENST00000328333 PANK3Q9H999 370 aa16.88■□□□□ 0.29
COL7A1-201ENST00000328333 BRPF3Q9ULD4 1205 aa16.88■□□□□ 0.29
COL7A1-201ENST00000328333 GCC1Q96CN9 775 aa16.87■□□□□ 0.29
COL7A1-201ENST00000328333 SMTNL1A8MU46 457 aa16.87■□□□□ 0.29
COL7A1-201ENST00000328333 PPM1EQ8WY54 764 aa16.87■□□□□ 0.29
COL7A1-201ENST00000328333 PDE3AQ14432 1141 aa16.87■□□□□ 0.29
COL7A1-201ENST00000328333 RNF214Q8ND24 703 aa16.87■□□□□ 0.29
COL7A1-201ENST00000328333 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL7A1-201ENST00000328333 PRKCSHP14314 528 aaPredicted RBP16.86■□□□□ 0.29
COL7A1-201ENST00000328333 DYNC1I1O14576 645 aa16.86■□□□□ 0.29
COL7A1-201ENST00000328333 FILIP1Q7Z7B0 1213 aa16.86■□□□□ 0.29
COL7A1-201ENST00000328333 CNKSR2Q8WXI2 1034 aa16.86■□□□□ 0.29
COL7A1-201ENST00000328333 KRI1Q8N9T8 703 aaKnown RBP16.86■□□□□ 0.29
COL7A1-201ENST00000328333 CCDC102AQ96A19 550 aa16.85■□□□□ 0.29
COL7A1-201ENST00000328333 SRCIN1Q9C0H9 1055 aa16.85■□□□□ 0.29
COL7A1-201ENST00000328333 STAMBPO95630 424 aa16.85■□□□□ 0.29
COL7A1-201ENST00000328333 JAKMIP3Q5VZ66 844 aa16.85■□□□□ 0.29
COL7A1-201ENST00000328333 GOLGA6L9A6NEM1 432 aa16.85■□□□□ 0.29
COL7A1-201ENST00000328333 CTR9Q6PD62 1173 aa16.84■□□□□ 0.29
COL7A1-201ENST00000328333 NGDNQ8NEJ9 315 aaKnown RBP16.84■□□□□ 0.29
COL7A1-201ENST00000328333 PLIN1O60240 522 aa16.84■□□□□ 0.29
COL7A1-201ENST00000328333 ZNF397Q8NF99 534 aaPredicted RBP16.84■□□□□ 0.29
COL7A1-201ENST00000328333 STK38Q15208 465 aa16.84■□□□□ 0.29
COL7A1-201ENST00000328333 ST20-MTHFSA0A0A6YYL1 179 aa16.84■□□□□ 0.29
COL7A1-201ENST00000328333 CCDC83Q8IWF9 413 aa16.84■□□□□ 0.29
COL7A1-201ENST00000328333 SFPQP23246 707 aaKnown RBP eCLIP16.83■□□□□ 0.29
COL7A1-201ENST00000328333 ARHGAP29Q52LW3 1261 aa16.83■□□□□ 0.29
COL7A1-201ENST00000328333 GNAI3P08754 354 aa16.83■□□□□ 0.29
COL7A1-201ENST00000328333 DNAJC2Q99543 621 aaKnown RBP16.83■□□□□ 0.29
COL7A1-201ENST00000328333 CCDC88BA6NC98 1476 aa16.83■□□□□ 0.29
COL7A1-201ENST00000328333 TUBB4BP68371 445 aa16.83■□□□□ 0.28
COL7A1-201ENST00000328333 CENPHQ9H3R5 247 aa16.83■□□□□ 0.28
COL7A1-201ENST00000328333 IVLP07476 585 aa16.83■□□□□ 0.28
COL7A1-201ENST00000328333 TRIM22Q8IYM9 498 aa16.83■□□□□ 0.28
COL7A1-201ENST00000328333 FOXD1Q16676 465 aa16.83■□□□□ 0.28
COL7A1-201ENST00000328333 K7ELQ4 463 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-201ENST00000328333 MYOM3Q5VTT5 1437 aa16.82■□□□□ 0.28
COL7A1-201ENST00000328333 PRPF40AO75400 957 aaKnown RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 GCOM1H8Y6P7 765 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 MYZAPP0CAP1 466 aa16.81■□□□□ 0.28
COL7A1-201ENST00000328333 FKBP5Q13451 457 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 SMC1AQ14683 1233 aaKnown RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 EPB41L2O43491 1005 aaKnown RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 TRIM21P19474 475 aaKnown RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 GIGYF2Q6Y7W6 1299 aaKnown RBP16.81■□□□□ 0.28
COL7A1-201ENST00000328333 FBXO3Q9UK99 471 aa16.81■□□□□ 0.28
COL7A1-201ENST00000328333 BCL2L13Q9BXK5 485 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 WWC2Q6AWC2 1192 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 TIGD1Q96MW7 591 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 VGFO15240 615 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-201ENST00000328333 DIAPH1O60610 1272 aaKnown RBP16.8■□□□□ 0.28
COL7A1-201ENST00000328333 SPECC1LQ69YQ0 1117 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 UBE2Q2Q8WVN8 375 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 FIBPO43427 364 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 DDX12PQ92771 950 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 FBXW7Q969H0 707 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 PRIMPOLQ96LW4 560 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 PDS5BQ9NTI5 1447 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 TBC1D2BQ9UPU7 963 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 RRP7AQ9Y3A4 280 aaKnown RBP16.8■□□□□ 0.28
COL7A1-201ENST00000328333 CYP46A1Q9Y6A2 500 aa16.8■□□□□ 0.28
COL7A1-201ENST00000328333 CETN2P41208 172 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 NEK4P51957 841 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 RBM10P98175 930 aaKnown RBP16.79■□□□□ 0.28
COL7A1-201ENST00000328333 VPS36Q86VN1 386 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 SMG6Q86US8 1419 aaKnown RBP16.79■□□□□ 0.28
COL7A1-201ENST00000328333 FYCO1Q9BQS8 1478 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 UBTFL1P0CB47 393 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-201ENST00000328333 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.79■□□□□ 0.28
COL7A1-201ENST00000328333 SPC24Q8NBT2 197 aa16.79■□□□□ 0.28
COL7A1-201ENST00000328333 KIF5CO60282 957 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms