RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TTC21BQ7Z4L5 1316 aa24.95■■□□□ 1.58
HMGA1-201ENST00000311487 AKAP12Q02952 1782 aa24.94■■□□□ 1.58
HMGA1-201ENST00000311487 PER1O15534 1290 aaPredicted RBP24.94■■□□□ 1.58
HMGA1-201ENST00000311487 ABTB2Q8N961 1025 aa24.94■■□□□ 1.58
HMGA1-201ENST00000311487 KNSTRNQ9Y448 316 aa24.94■■□□□ 1.58
HMGA1-201ENST00000311487 PXDNQ92626 1479 aa24.93■■□□□ 1.58
HMGA1-201ENST00000311487 CC2D1BQ5T0F9 858 aaKnown RBP24.93■■□□□ 1.58
HMGA1-201ENST00000311487 GGNBP2Q9H3C7 697 aa24.93■■□□□ 1.58
HMGA1-201ENST00000311487 SOS2Q07890 1332 aaPredicted RBP24.93■■□□□ 1.58
HMGA1-201ENST00000311487 SOX12O15370 315 aa24.91■■□□□ 1.58
HMGA1-201ENST00000311487 PHLPP1O60346 1717 aa24.9■■□□□ 1.58
HMGA1-201ENST00000311487 NHSL1Q5SYE7 1610 aa24.9■■□□□ 1.58
HMGA1-201ENST00000311487 CABLES1Q8TDN4 633 aa24.9■■□□□ 1.58
HMGA1-201ENST00000311487 MON2Q7Z3U7 1717 aa24.89■■□□□ 1.58
HMGA1-201ENST00000311487 FYB1O15117 783 aa24.89■■□□□ 1.58
HMGA1-201ENST00000311487 EDC4Q6P2E9 1401 aaKnown RBP24.89■■□□□ 1.58
HMGA1-201ENST00000311487 SSH2Q76I76 1423 aa24.89■■□□□ 1.58
HMGA1-201ENST00000311487 FBLN1P23142 703 aa24.88■■□□□ 1.57
HMGA1-201ENST00000311487 TNNT2P45379 298 aaPredicted RBP24.88■■□□□ 1.57
HMGA1-201ENST00000311487 NLRP6P59044 892 aa24.88■■□□□ 1.57
HMGA1-201ENST00000311487 SPATA31A3Q5VYP0 1347 aa24.87■■□□□ 1.57
HMGA1-201ENST00000311487 FBXO41Q8TF61 875 aa24.86■■□□□ 1.57
HMGA1-201ENST00000311487 CGNL1Q0VF96 1302 aa24.86■■□□□ 1.57
HMGA1-201ENST00000311487 AHDC1Q5TGY3 1603 aaPredicted RBP24.86■■□□□ 1.57
HMGA1-201ENST00000311487 TRPM3Q9HCF6 1732 aaPredicted RBP24.85■■□□□ 1.57
HMGA1-201ENST00000311487 AMER1Q5JTC6 1135 aaPredicted RBP24.85■■□□□ 1.57
HMGA1-201ENST00000311487 LRRC59Q96AG4 307 aaKnown RBP24.85■■□□□ 1.57
HMGA1-201ENST00000311487 NRKQ7Z2Y5 1582 aa24.85■■□□□ 1.57
HMGA1-201ENST00000311487 TNS3Q68CZ2 1445 aa24.83■■□□□ 1.57
HMGA1-201ENST00000311487 COL16A1Q07092 1604 aaPredicted RBP24.83■■□□□ 1.56
HMGA1-201ENST00000311487 SBNO1A3KN83 1393 aa24.82■■□□□ 1.56
HMGA1-201ENST00000311487 PIK3C2AO00443 1686 aa24.82■■□□□ 1.56
HMGA1-201ENST00000311487 TTC21AQ8NDW8 1320 aa24.81■■□□□ 1.56
HMGA1-201ENST00000311487 NUTM2BA6NNL0 878 aaPredicted RBP24.79■■□□□ 1.56
HMGA1-201ENST00000311487 NUTM2EB1AL46 878 aaPredicted RBP24.79■■□□□ 1.56
HMGA1-201ENST00000311487 NUTM2AQ8IVF1 878 aaPredicted RBP24.79■■□□□ 1.56
HMGA1-201ENST00000311487 COG3Q96JB2 828 aa24.79■■□□□ 1.56
HMGA1-201ENST00000311487 ZBTB7CA1YPR0 619 aa24.78■■□□□ 1.56
HMGA1-201ENST00000311487 ALS2Q96Q42 1657 aa24.77■■□□□ 1.56
HMGA1-201ENST00000311487 MORC1Q86VD1 984 aa24.77■■□□□ 1.56
HMGA1-201ENST00000311487 NLRP13Q86W25 1043 aa24.77■■□□□ 1.56
HMGA1-201ENST00000311487 HAP1P54257 671 aaPredicted RBP24.76■■□□□ 1.55
HMGA1-201ENST00000311487 PNPLA6Q8IY17 1366 aa24.76■■□□□ 1.55
HMGA1-201ENST00000311487 KIF20BQ96Q89 1820 aa24.75■■□□□ 1.55
HMGA1-201ENST00000311487 ZC3H6P61129 1189 aaKnown RBP24.74■■□□□ 1.55
HMGA1-201ENST00000311487 ARHGEF10O15013 1369 aa24.74■■□□□ 1.55
HMGA1-201ENST00000311487 BRD4O60885 1362 aaPredicted RBP24.73■■□□□ 1.55
HMGA1-201ENST00000311487 RRS1Q15050 365 aaKnown RBP24.73■■□□□ 1.55
HMGA1-201ENST00000311487 MED1Q15648 1581 aaPredicted RBP24.72■■□□□ 1.55
HMGA1-201ENST00000311487 ADAMTS2O95450 1211 aa24.72■■□□□ 1.55
HMGA1-201ENST00000311487 GCP02774 474 aa24.72■■□□□ 1.55
HMGA1-201ENST00000311487 OVOS2A0A0J9YW53 1432 aa24.71■■□□□ 1.55
HMGA1-201ENST00000311487 OVOS2Q6IE36 1432 aa24.71■■□□□ 1.55
HMGA1-201ENST00000311487 PPM1GO15355 546 aaPredicted RBP24.71■■□□□ 1.55
HMGA1-201ENST00000311487 ILDR1Q86SU0 546 aaPredicted RBP24.71■■□□□ 1.55
HMGA1-201ENST00000311487 MARF1Q9Y4F3 1742 aaKnown RBP24.7■■□□□ 1.55
HMGA1-201ENST00000311487 JCADQ9P266 1359 aa24.7■■□□□ 1.54
HMGA1-201ENST00000311487 USP31Q70CQ4 1352 aa24.69■■□□□ 1.54
HMGA1-201ENST00000311487 CHRNA2Q15822 529 aa24.67■■□□□ 1.54
HMGA1-201ENST00000311487 USP19O94966 1318 aa24.67■■□□□ 1.54
HMGA1-201ENST00000311487 PRKRIP1Q9H875 184 aaPredicted RBP24.66■■□□□ 1.54
HMGA1-201ENST00000311487 EMILIN1Q9Y6C2 1016 aa24.66■■□□□ 1.54
HMGA1-201ENST00000311487 NSD2O96028 1365 aa24.65■■□□□ 1.54
HMGA1-201ENST00000311487 ANP32CO43423 234 aa24.65■■□□□ 1.54
HMGA1-201ENST00000311487 KIAA0232Q92628 1395 aa24.63■■□□□ 1.53
HMGA1-201ENST00000311487 NPC1L1Q9UHC9 1359 aa24.63■■□□□ 1.53
HMGA1-201ENST00000311487 KCNH5Q8NCM2 988 aa24.62■■□□□ 1.53
HMGA1-201ENST00000311487 MAP3K19Q56UN5 1328 aa24.61■■□□□ 1.53
HMGA1-201ENST00000311487 POLKQ9UBT6 870 aa24.61■■□□□ 1.53
HMGA1-201ENST00000311487 PHRF1Q9P1Y6 1649 aaKnown RBP24.61■■□□□ 1.53
HMGA1-201ENST00000311487 ANKRD26Q9UPS8 1709 aa24.61■■□□□ 1.53
HMGA1-201ENST00000311487 PPP2R1AP30153 589 aa24.61■■□□□ 1.53
HMGA1-201ENST00000311487 PARD3Q8TEW0 1356 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 SHPRHQ149N8 1683 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 CRYBG1Q9Y4K1 1723 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 FAM83GA6ND36 823 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 PRDM11Q9NQV5 511 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 SLIT3O75094 1523 aa24.6■■□□□ 1.53
HMGA1-201ENST00000311487 MTHFSP49914 203 aa24.59■■□□□ 1.53
HMGA1-201ENST00000311487 COL22A1Q8NFW1 1626 aaPredicted RBP24.59■■□□□ 1.53
HMGA1-201ENST00000311487 ABCA3Q99758 1704 aa24.59■■□□□ 1.53
HMGA1-201ENST00000311487 LRP6O75581 1613 aa24.59■■□□□ 1.53
HMGA1-201ENST00000311487 MIER1Q8N108 512 aa24.59■■□□□ 1.53
HMGA1-201ENST00000311487 NFAT5O94916 1531 aa24.58■■□□□ 1.53
HMGA1-201ENST00000311487 AMPHP49418 695 aa24.58■■□□□ 1.53
HMGA1-201ENST00000311487 ARHGEF25Q86VW2 580 aa24.58■■□□□ 1.53
HMGA1-201ENST00000311487 C8orf37Q96NL8 207 aa24.58■■□□□ 1.53
HMGA1-201ENST00000311487 AXIN2Q9Y2T1 843 aa24.58■■□□□ 1.53
HMGA1-201ENST00000311487 RALBP1Q15311 655 aa24.57■■□□□ 1.52
HMGA1-201ENST00000311487 MEX3CQ5U5Q3 659 aaKnown RBP24.57■■□□□ 1.52
HMGA1-201ENST00000311487 MAP2P11137 1827 aaKnown RBP24.57■■□□□ 1.52
HMGA1-201ENST00000311487 LTV1Q96GA3 475 aaPredicted RBP24.57■■□□□ 1.52
HMGA1-201ENST00000311487 SPATA31A6Q5VVP1 1343 aa24.56■■□□□ 1.52
HMGA1-201ENST00000311487 USP54Q70EL1 1684 aa24.55■■□□□ 1.52
HMGA1-201ENST00000311487 CCDC184Q52MB2 194 aa24.55■■□□□ 1.52
HMGA1-201ENST00000311487 HSP90AB2PQ58FF8 381 aa24.55■■□□□ 1.52
HMGA1-201ENST00000311487 LTN1O94822 1766 aa24.53■■□□□ 1.52
HMGA1-201ENST00000311487 NGLY1Q96IV0 654 aa24.52■■□□□ 1.52
HMGA1-201ENST00000311487 MYBBP1AQ9BQG0 1328 aaKnown RBP24.52■■□□□ 1.52
HMGA1-201ENST00000311487 HOXC9P31274 260 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms