RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 SPATA31A6Q5VVP1 1343 aa24.73■■□□□ 1.55
SSSCA1-201ENST00000309328 C11orf95C9JLR9 678 aaPredicted RBP24.72■■□□□ 1.55
SSSCA1-201ENST00000309328 PAK3O75914 559 aaPredicted RBP24.72■■□□□ 1.55
SSSCA1-201ENST00000309328 SSH2Q76I76 1423 aa24.71■■□□□ 1.55
SSSCA1-201ENST00000309328 PNPLA6Q8IY17 1366 aa24.71■■□□□ 1.55
SSSCA1-201ENST00000309328 WASHC2AQ641Q2 1341 aa24.69■■□□□ 1.54
SSSCA1-201ENST00000309328 TTC21BQ7Z4L5 1316 aa24.69■■□□□ 1.54
SSSCA1-201ENST00000309328 TRPM3Q9HCF6 1732 aaPredicted RBP24.69■■□□□ 1.54
SSSCA1-201ENST00000309328 AKAP12Q02952 1782 aa24.68■■□□□ 1.54
SSSCA1-201ENST00000309328 SHPRHQ149N8 1683 aa24.68■■□□□ 1.54
SSSCA1-201ENST00000309328 ABTB2Q8N961 1025 aa24.67■■□□□ 1.54
SSSCA1-201ENST00000309328 LMOD2Q6P5Q4 547 aa24.66■■□□□ 1.54
SSSCA1-201ENST00000309328 MON2Q7Z3U7 1717 aa24.66■■□□□ 1.54
SSSCA1-201ENST00000309328 MYOM1P52179 1685 aa24.66■■□□□ 1.54
SSSCA1-201ENST00000309328 NLRP13Q86W25 1043 aa24.65■■□□□ 1.54
SSSCA1-201ENST00000309328 COL22A1Q8NFW1 1626 aaPredicted RBP24.64■■□□□ 1.53
SSSCA1-201ENST00000309328 NRKQ7Z2Y5 1582 aa24.63■■□□□ 1.53
SSSCA1-201ENST00000309328 ALS2Q96Q42 1657 aa24.62■■□□□ 1.53
SSSCA1-201ENST00000309328 PANK3Q9H999 370 aa24.62■■□□□ 1.53
SSSCA1-201ENST00000309328 MED1Q15648 1581 aaPredicted RBP24.62■■□□□ 1.53
SSSCA1-201ENST00000309328 CGNL1Q0VF96 1302 aa24.61■■□□□ 1.53
SSSCA1-201ENST00000309328 USP31Q70CQ4 1352 aa24.61■■□□□ 1.53
SSSCA1-201ENST00000309328 NLRP6P59044 892 aa24.6■■□□□ 1.53
SSSCA1-201ENST00000309328 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.6■■□□□ 1.53
SSSCA1-201ENST00000309328 NSD3Q9BZ95 1437 aa24.6■■□□□ 1.53
SSSCA1-201ENST00000309328 USP19O94966 1318 aa24.59■■□□□ 1.53
SSSCA1-201ENST00000309328 HAP1P54257 671 aaPredicted RBP24.58■■□□□ 1.53
SSSCA1-201ENST00000309328 KNSTRNQ9Y448 316 aa24.58■■□□□ 1.53
SSSCA1-201ENST00000309328 CARD14Q9BXL6 1004 aa24.57■■□□□ 1.52
SSSCA1-201ENST00000309328 NSD2O96028 1365 aa24.56■■□□□ 1.52
SSSCA1-201ENST00000309328 KCNH5Q8NCM2 988 aa24.56■■□□□ 1.52
SSSCA1-201ENST00000309328 ZNF316A6NFI3 1004 aaPredicted RBP24.55■■□□□ 1.52
SSSCA1-201ENST00000309328 COG3Q96JB2 828 aa24.55■■□□□ 1.52
SSSCA1-201ENST00000309328 NME9Q86XW9 330 aa24.54■■□□□ 1.52
SSSCA1-201ENST00000309328 PIK3C2AO00443 1686 aa24.53■■□□□ 1.52
SSSCA1-201ENST00000309328 FYB1O15117 783 aa24.52■■□□□ 1.52
SSSCA1-201ENST00000309328 OVOS2A0A0J9YW53 1432 aa24.52■■□□□ 1.52
SSSCA1-201ENST00000309328 OVOS2Q6IE36 1432 aa24.52■■□□□ 1.52
SSSCA1-201ENST00000309328 NUTM2BA6NNL0 878 aaPredicted RBP24.51■■□□□ 1.51
SSSCA1-201ENST00000309328 NUTM2EB1AL46 878 aaPredicted RBP24.51■■□□□ 1.51
SSSCA1-201ENST00000309328 MEX3CQ5U5Q3 659 aaKnown RBP24.51■■□□□ 1.51
SSSCA1-201ENST00000309328 NUTM2GQ5VZR2 741 aa24.51■■□□□ 1.51
SSSCA1-201ENST00000309328 NUTM2AQ8IVF1 878 aaPredicted RBP24.51■■□□□ 1.51
SSSCA1-201ENST00000309328 USP54Q70EL1 1684 aa24.5■■□□□ 1.51
SSSCA1-201ENST00000309328 GCP02774 474 aa24.5■■□□□ 1.51
SSSCA1-201ENST00000309328 SLIT3O75094 1523 aa24.5■■□□□ 1.51
SSSCA1-201ENST00000309328 CPDO75976 1380 aa24.49■■□□□ 1.51
SSSCA1-201ENST00000309328 NPC1L1Q9UHC9 1359 aa24.49■■□□□ 1.51
SSSCA1-201ENST00000309328 PER1O15534 1290 aaPredicted RBP24.48■■□□□ 1.51
SSSCA1-201ENST00000309328 CABLES1Q8TDN4 633 aa24.48■■□□□ 1.51
SSSCA1-201ENST00000309328 LRP6O75581 1613 aa24.46■■□□□ 1.51
SSSCA1-201ENST00000309328 GGNBP2Q9H3C7 697 aa24.46■■□□□ 1.51
SSSCA1-201ENST00000309328 ADAMTS2O95450 1211 aa24.45■■□□□ 1.5
SSSCA1-201ENST00000309328 AMER1Q5JTC6 1135 aaPredicted RBP24.44■■□□□ 1.5
SSSCA1-201ENST00000309328 PRDM11Q9NQV5 511 aa24.44■■□□□ 1.5
SSSCA1-201ENST00000309328 CRYBG1Q9Y4K1 1723 aa24.44■■□□□ 1.5
SSSCA1-201ENST00000309328 PHRF1Q9P1Y6 1649 aaKnown RBP24.43■■□□□ 1.5
SSSCA1-201ENST00000309328 ABCA3Q99758 1704 aa24.43■■□□□ 1.5
SSSCA1-201ENST00000309328 KIF20BQ96Q89 1820 aa24.41■■□□□ 1.5
SSSCA1-201ENST00000309328 PLEKHG5O94827 1062 aa24.41■■□□□ 1.5
SSSCA1-201ENST00000309328 NGLY1Q96IV0 654 aa24.41■■□□□ 1.5
SSSCA1-201ENST00000309328 ZRANB1Q9UGI0 708 aa24.41■■□□□ 1.5
SSSCA1-201ENST00000309328 KIAA0232Q92628 1395 aa24.41■■□□□ 1.5
SSSCA1-201ENST00000309328 FNBP4Q8N3X1 1017 aaPredicted RBP24.4■■□□□ 1.5
SSSCA1-201ENST00000309328 C8orf37Q96NL8 207 aa24.4■■□□□ 1.5
SSSCA1-201ENST00000309328 NFAT5O94916 1531 aa24.4■■□□□ 1.5
SSSCA1-201ENST00000309328 ABCC6O95255 1503 aa24.4■■□□□ 1.5
SSSCA1-201ENST00000309328 DDX10Q13206 875 aaKnown RBP24.39■■□□□ 1.49
SSSCA1-201ENST00000309328 ARHGEF25Q86VW2 580 aa24.39■■□□□ 1.49
SSSCA1-201ENST00000309328 AATKQ6ZMQ8 1374 aa24.39■■□□□ 1.49
SSSCA1-201ENST00000309328 ZC3H6P61129 1189 aaKnown RBP24.38■■□□□ 1.49
SSSCA1-201ENST00000309328 MORC1Q86VD1 984 aa24.38■■□□□ 1.49
SSSCA1-201ENST00000309328 PHF23Q9BUL5 403 aaPredicted RBP24.38■■□□□ 1.49
SSSCA1-201ENST00000309328 KIF24Q5T7B8 1368 aa24.38■■□□□ 1.49
SSSCA1-201ENST00000309328 ZNF772Q68DY9 489 aaPredicted RBP24.37■■□□□ 1.49
SSSCA1-201ENST00000309328 MARF1Q9Y4F3 1742 aaKnown RBP24.36■■□□□ 1.49
SSSCA1-201ENST00000309328 COL14A1Q05707 1796 aaKnown RBP24.35■■□□□ 1.49
SSSCA1-201ENST00000309328 RTL1A6NKG5 1358 aa24.35■■□□□ 1.49
SSSCA1-201ENST00000309328 FAM83GA6ND36 823 aa24.35■■□□□ 1.49
SSSCA1-201ENST00000309328 SLIT2O94813 1529 aa24.35■■□□□ 1.49
SSSCA1-201ENST00000309328 SOX12O15370 315 aa24.34■■□□□ 1.49
SSSCA1-201ENST00000309328 AFF2P51816 1311 aa24.34■■□□□ 1.49
SSSCA1-201ENST00000309328 ANKRD26Q9UPS8 1709 aa24.33■■□□□ 1.49
SSSCA1-201ENST00000309328 USP21Q9UK80 565 aa24.32■■□□□ 1.48
SSSCA1-201ENST00000309328 CC2D1BQ5T0F9 858 aaKnown RBP24.31■■□□□ 1.48
SSSCA1-201ENST00000309328 UNC5CLQ8IV45 518 aa24.31■■□□□ 1.48
SSSCA1-201ENST00000309328 BLMP54132 1417 aaPredicted RBP24.3■■□□□ 1.48
SSSCA1-201ENST00000309328 BTG4Q9NY30 223 aa24.3■■□□□ 1.48
SSSCA1-201ENST00000309328 MAP3K19Q56UN5 1328 aa24.3■■□□□ 1.48
SSSCA1-201ENST00000309328 AMPHP49418 695 aa24.29■■□□□ 1.48
SSSCA1-201ENST00000309328 CHRNA2Q15822 529 aa24.29■■□□□ 1.48
SSSCA1-201ENST00000309328 IP6K1Q92551 441 aa24.29■■□□□ 1.48
SSSCA1-201ENST00000309328 NWD2Q9ULI1 1742 aa24.29■■□□□ 1.48
SSSCA1-201ENST00000309328 FLT4P35916 1363 aa24.29■■□□□ 1.48
SSSCA1-201ENST00000309328 BCL9LQ86UU0 1499 aa24.27■■□□□ 1.48
SSSCA1-201ENST00000309328 ZBTB7CA1YPR0 619 aa24.27■■□□□ 1.48
SSSCA1-201ENST00000309328 TRPC5Q9UL62 973 aaPredicted RBP24.27■■□□□ 1.48
SSSCA1-201ENST00000309328 RALBP1Q15311 655 aa24.26■■□□□ 1.47
SSSCA1-201ENST00000309328 LMO7Q8WWI1 1683 aa24.25■■□□□ 1.47
SSSCA1-201ENST00000309328 EVA1CP58658 441 aa24.25■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms