RNA–Protein interactions for RNA: ENST00000307106.3

SMIM4-201, Transcript of small integral membrane protein 4, humanhuman

TSL 2 BASIC

Gene SMIM4, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-201ENST00000307106 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
SMIM4-201ENST00000307106 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
SMIM4-201ENST00000307106 ANKARQ7Z5J8 1434 aa17.83■□□□□ 0.45
SMIM4-201ENST00000307106 PHRF1Q9P1Y6 1649 aaKnown RBP17.82■□□□□ 0.44
SMIM4-201ENST00000307106 APBA3O96018 575 aa17.81■□□□□ 0.44
SMIM4-201ENST00000307106 FAM196AQ6ZSG2 479 aa17.81■□□□□ 0.44
SMIM4-201ENST00000307106 SAFB2Q14151 953 aaKnown RBP eCLIP17.8■□□□□ 0.44
SMIM4-201ENST00000307106 ITSN1Q15811 1721 aa17.79■□□□□ 0.44
SMIM4-201ENST00000307106 GPRASP1Q5JY77 1395 aa17.79■□□□□ 0.44
SMIM4-201ENST00000307106 DHX57Q6P158 1386 aaKnown RBP17.79■□□□□ 0.44
SMIM4-201ENST00000307106 SPATA31A1Q5TZJ5 1347 aa17.78■□□□□ 0.44
SMIM4-201ENST00000307106 DCAF8L1A6NGE4 600 aa17.78■□□□□ 0.44
SMIM4-201ENST00000307106 PRAM1Q96QH2 718 aa17.78■□□□□ 0.44
SMIM4-201ENST00000307106 PPP1R1BQ9UD71 204 aaPredicted RBP17.78■□□□□ 0.44
SMIM4-201ENST00000307106 CHD4Q14839 1912 aa17.78■□□□□ 0.44
SMIM4-201ENST00000307106 DLC1Q96QB1 1528 aa17.77■□□□□ 0.44
SMIM4-201ENST00000307106 NBPF8Q3BBV2 869 aa17.77■□□□□ 0.44
SMIM4-201ENST00000307106 NBPF14Q5TI25 921 aa17.77■□□□□ 0.44
SMIM4-201ENST00000307106 C14orf93Q9H972 538 aaKnown RBP17.77■□□□□ 0.44
SMIM4-201ENST00000307106 PRDM11Q9NQV5 511 aa17.77■□□□□ 0.44
SMIM4-201ENST00000307106 SBF2Q86WG5 1849 aa17.77■□□□□ 0.43
SMIM4-201ENST00000307106 NINLQ9Y2I6 1382 aa17.76■□□□□ 0.43
SMIM4-201ENST00000307106 ACIN1Q9UKV3 1341 aaKnown RBP17.75■□□□□ 0.43
SMIM4-201ENST00000307106 SPON1Q9HCB6 807 aa17.75■□□□□ 0.43
SMIM4-201ENST00000307106 RGPD3A6NKT7 1758 aaPredicted RBP17.75■□□□□ 0.43
SMIM4-201ENST00000307106 RGPD4Q7Z3J3 1758 aa17.75■□□□□ 0.43
SMIM4-201ENST00000307106 CFAP70Q5T0N1 1121 aa17.74■□□□□ 0.43
SMIM4-201ENST00000307106 POGKQ9P215 609 aa17.74■□□□□ 0.43
SMIM4-201ENST00000307106 TULP4Q9NRJ4 1543 aa17.73■□□□□ 0.43
SMIM4-201ENST00000307106 STRN4Q9NRL3 753 aa17.73■□□□□ 0.43
SMIM4-201ENST00000307106 KIAA0232Q92628 1395 aa17.73■□□□□ 0.43
SMIM4-201ENST00000307106 CASZ1Q86V15 1759 aa17.73■□□□□ 0.43
SMIM4-201ENST00000307106 PARP4Q9UKK3 1724 aaKnown RBP17.72■□□□□ 0.43
SMIM4-201ENST00000307106 EIF3AQ14152 1382 aaKnown RBP17.72■□□□□ 0.43
SMIM4-201ENST00000307106 KCNQ2O43526 872 aa17.72■□□□□ 0.43
SMIM4-201ENST00000307106 PAK3O75914 559 aaPredicted RBP17.72■□□□□ 0.43
SMIM4-201ENST00000307106 PDE3BQ13370 1112 aa17.71■□□□□ 0.43
SMIM4-201ENST00000307106 CHRNA2Q15822 529 aa17.71■□□□□ 0.43
SMIM4-201ENST00000307106 USP35Q9P2H5 1018 aa17.71■□□□□ 0.43
SMIM4-201ENST00000307106 PRR36Q9H6K5 1346 aa17.71■□□□□ 0.42
SMIM4-201ENST00000307106 NRKQ7Z2Y5 1582 aa17.7■□□□□ 0.42
SMIM4-201ENST00000307106 HIRIP3Q9BW71 556 aaPredicted RBP17.7■□□□□ 0.42
SMIM4-201ENST00000307106 MYOM1P52179 1685 aa17.69■□□□□ 0.42
SMIM4-201ENST00000307106 NGDNQ8NEJ9 315 aaKnown RBP17.69■□□□□ 0.42
SMIM4-201ENST00000307106 BARGINQ6ZT62 677 aa17.68■□□□□ 0.42
SMIM4-201ENST00000307106 SSH2Q76I76 1423 aa17.68■□□□□ 0.42
SMIM4-201ENST00000307106 LMO7Q8WWI1 1683 aa17.67■□□□□ 0.42
SMIM4-201ENST00000307106 ADGRB1O14514 1584 aa17.67■□□□□ 0.42
SMIM4-201ENST00000307106 MINK1Q8N4C8 1332 aaPredicted RBP17.67■□□□□ 0.42
SMIM4-201ENST00000307106 PEAK1Q9H792 1746 aa17.67■□□□□ 0.42
SMIM4-201ENST00000307106 ZC3H6P61129 1189 aaKnown RBP17.66■□□□□ 0.42
SMIM4-201ENST00000307106 MPHOSPH9Q99550 1183 aa17.66■□□□□ 0.42
SMIM4-201ENST00000307106 ATP7BP35670 1465 aa17.66■□□□□ 0.42
SMIM4-201ENST00000307106 EVA1CP58658 441 aa17.65■□□□□ 0.42
SMIM4-201ENST00000307106 ARHGEF28Q8N1W1 1705 aaKnown RBP17.64■□□□□ 0.41
SMIM4-201ENST00000307106 AKAP12Q02952 1782 aa17.64■□□□□ 0.41
SMIM4-201ENST00000307106 WNK3Q9BYP7 1800 aa17.64■□□□□ 0.41
SMIM4-201ENST00000307106 TRAK1Q9UPV9 953 aa17.64■□□□□ 0.41
SMIM4-201ENST00000307106 UTRNP46939 3433 aa17.63■□□□□ 0.41
SMIM4-201ENST00000307106 WASLO00401 505 aaPredicted RBP17.63■□□□□ 0.41
SMIM4-201ENST00000307106 ZNF784Q8NCA9 323 aaPredicted RBP17.63■□□□□ 0.41
SMIM4-201ENST00000307106 TOPAZ1Q8N9V7 1692 aa17.63■□□□□ 0.41
SMIM4-201ENST00000307106 TCP11L2Q8N4U5 519 aa17.62■□□□□ 0.41
SMIM4-201ENST00000307106 LRRC37A3O60309 1634 aa17.61■□□□□ 0.41
SMIM4-201ENST00000307106 LARP1Q6PKG0 1096 aaKnown RBP17.61■□□□□ 0.41
SMIM4-201ENST00000307106 SENP3-EIF4A1A0A087X0R7 540 aa17.6■□□□□ 0.41
SMIM4-201ENST00000307106 NUTM2GQ5VZR2 741 aa17.6■□□□□ 0.41
SMIM4-201ENST00000307106 OVOS2A0A0G2JMS6 1433 aa17.59■□□□□ 0.41
SMIM4-201ENST00000307106 OVOS2A0A0J9YW53 1432 aa17.59■□□□□ 0.41
SMIM4-201ENST00000307106 OVOS2Q6IE36 1432 aa17.59■□□□□ 0.41
SMIM4-201ENST00000307106 C11orf95C9JLR9 678 aaPredicted RBP17.58■□□□□ 0.4
SMIM4-201ENST00000307106 ANO8Q9HCE9 1232 aaPredicted RBP17.58■□□□□ 0.4
SMIM4-201ENST00000307106 THRAP3Q9Y2W1 955 aaKnown RBP17.58■□□□□ 0.4
SMIM4-201ENST00000307106 PLSCR1O15162 318 aa17.57■□□□□ 0.4
SMIM4-201ENST00000307106 PDGFDQ9GZP0 370 aaPredicted RBP17.56■□□□□ 0.4
SMIM4-201ENST00000307106 COL5A2P05997 1499 aaPredicted RBP17.56■□□□□ 0.4
SMIM4-201ENST00000307106 CPDO75976 1380 aa17.55■□□□□ 0.4
SMIM4-201ENST00000307106 ZBTB7AO95365 584 aa17.55■□□□□ 0.4
SMIM4-201ENST00000307106 NUDT16Q96DE0 195 aaKnown RBP17.55■□□□□ 0.4
SMIM4-201ENST00000307106 C1QTNF8P60827 252 aa17.54■□□□□ 0.4
SMIM4-201ENST00000307106 RGPD5Q99666 1765 aa17.53■□□□□ 0.4
SMIM4-201ENST00000307106 PTGER2P43116 358 aa17.53■□□□□ 0.4
SMIM4-201ENST00000307106 CRB1P82279 1406 aa17.53■□□□□ 0.4
SMIM4-201ENST00000307106 POLR3AO14802 1390 aaPredicted RBP17.53■□□□□ 0.4
SMIM4-201ENST00000307106 IFFO2Q5TF58 517 aa17.52■□□□□ 0.4
SMIM4-201ENST00000307106 ABTB2Q8N961 1025 aa17.52■□□□□ 0.4
SMIM4-201ENST00000307106 BCL11BQ9C0K0 894 aaPredicted RBP17.52■□□□□ 0.4
SMIM4-201ENST00000307106 ACEP12821 1306 aa17.51■□□□□ 0.39
SMIM4-201ENST00000307106 ATF5Q9Y2D1 282 aaPredicted RBP17.51■□□□□ 0.39
SMIM4-201ENST00000307106 USP19O94966 1318 aa17.5■□□□□ 0.39
SMIM4-201ENST00000307106 SYT17Q9BSW7 474 aa17.5■□□□□ 0.39
SMIM4-201ENST00000307106 FHDC1Q9C0D6 1143 aaPredicted RBP17.5■□□□□ 0.39
SMIM4-201ENST00000307106 COL18A1P39060 1754 aa17.5■□□□□ 0.39
SMIM4-201ENST00000307106 DDB1Q16531 1140 aa17.49■□□□□ 0.39
SMIM4-201ENST00000307106 PTF1AQ7RTS3 328 aa17.49■□□□□ 0.39
SMIM4-201ENST00000307106 KAT6BQ8WYB5 2073 aa17.48■□□□□ 0.39
SMIM4-201ENST00000307106 PROM2Q8N271 834 aa17.48■□□□□ 0.39
SMIM4-201ENST00000307106 GCP02774 474 aa17.47■□□□□ 0.39
SMIM4-201ENST00000307106 CDK19Q9BWU1 502 aa17.47■□□□□ 0.39
SMIM4-201ENST00000307106 KDM2AQ9Y2K7 1162 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms