RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 SLC4A10Q6U841 1118 aa13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 USP47Q96K76 1375 aa13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 SAFBQ15424 915 aaKnown RBP eCLIP13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 ZNF330Q9Y3S2 320 aaPredicted RBP13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 ANKRD18BA2A2Z9 1011 aa13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 ZKSCAN1P17029 563 aaPredicted RBP13.26□□□□□ -0.29
HDGFL3-201ENST00000299633 TRAK2O60296 914 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 CCDC97Q96F63 343 aaPredicted RBP13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 CARMIL2Q6F5E8 1435 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 TXLNAP40222 546 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 RNF187Q5TA31 235 aaPredicted RBP13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 AMOTL1Q8IY63 956 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 TIGD1Q96MW7 591 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 PDE3BQ13370 1112 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 RUFY2Q8WXA3 655 aa13.25□□□□□ -0.29
HDGFL3-201ENST00000299633 NUTM2DQ5VT03 806 aaPredicted RBP13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 GGT6Q6P531 493 aa13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 TRERF1Q96PN7 1200 aa13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 LRRFIP2Q9Y608 721 aaKnown RBP13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 FILIP1LQ4L180 1135 aa13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 V9GYY5 206 aaPredicted RBP13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 CTDP1Q9Y5B0 961 aaPredicted RBP13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 NFXL1Q6ZNB6 911 aa13.24□□□□□ -0.29
HDGFL3-201ENST00000299633 MCM3P25205 808 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 SMC1AQ14683 1233 aaKnown RBP13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 PPFIBP1Q86W92 1011 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 GRIPAP1Q4V328 841 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 RUSC2Q8N2Y8 1516 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 BCL2L13Q9BXK5 485 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 SARNPP82979 210 aaKnown RBP13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 SPC24Q8NBT2 197 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 FAM184BQ9ULE4 1060 aa13.23□□□□□ -0.29
HDGFL3-201ENST00000299633 CRACR2AQ9BSW2 395 aa13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 VPS37CA5D8V6 355 aaPredicted RBP13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 BMS1Q14692 1282 aaKnown RBP13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 CCDC160A6NGH7 325 aa13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 CCDC144AA2RUR9 1427 aa13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 NOL10Q9BSC4 688 aaKnown RBP13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 SMC3Q9UQE7 1217 aa13.22□□□□□ -0.29
HDGFL3-201ENST00000299633 TDO2P48775 406 aa13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 DDX46Q7L014 1031 aaKnown RBP13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 PUS7Q96PZ0 661 aaKnown RBP13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 CUX1P39880 1505 aa13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 MBD3O95983 291 aa13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 NOL3O60936 208 aaKnown RBP13.21□□□□□ -0.29
HDGFL3-201ENST00000299633 KINO60870 393 aaKnown RBP13.21□□□□□ -0.3
HDGFL3-201ENST00000299633 CBX1P83916 185 aa13.21□□□□□ -0.3
HDGFL3-201ENST00000299633 PANK3Q9H999 370 aa13.21□□□□□ -0.3
HDGFL3-201ENST00000299633 FOSBP53539 338 aa13.2□□□□□ -0.3
HDGFL3-201ENST00000299633 BRMS1Q9HCU9 246 aa13.2□□□□□ -0.3
HDGFL3-201ENST00000299633 DNAAF4Q8WXU2 420 aa13.2□□□□□ -0.3
HDGFL3-201ENST00000299633 SDF4Q9BRK5 362 aa13.2□□□□□ -0.3
HDGFL3-201ENST00000299633 TCHPQ9BT92 498 aa13.2□□□□□ -0.3
HDGFL3-201ENST00000299633 DZIP1Q86YF9 867 aaKnown RBP13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 GIGYF2Q6Y7W6 1299 aaKnown RBP13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 MIPOL1Q8TD10 442 aa13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 TRDNQ13061 729 aa13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 TERF2IPQ9NYB0 399 aa13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 ANKRD45Q5TZF3 282 aa13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 HNRNPMP52272 730 aaKnown RBP eCLIP13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 JAKMIP3Q5VZ66 844 aa13.19□□□□□ -0.3
HDGFL3-201ENST00000299633 ST20-MTHFSA0A0A6YYL1 179 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 HSP90AB4PQ58FF6 505 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 C6orf163Q5TEZ5 329 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 GCOM1H8Y6P7 765 aaPredicted RBP13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 MYZAPP0CAP1 466 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 HDGFP51858 240 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 WWC2Q6AWC2 1192 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 ESPNB1AK53 854 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 ERICH2A1L162 156 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 PDIA4P13667 645 aaKnown RBP13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 CCDC148Q8NFR7 591 aa13.18□□□□□ -0.3
HDGFL3-201ENST00000299633 DHX16O60231 1041 aaKnown RBP13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 COG6Q9Y2V7 657 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 RAD21O60216 631 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 GRPEL1Q9HAV7 217 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 BRPF1P55201 1214 aaPredicted RBP13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 C22orf23Q9BZE7 217 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 ZFP91Q96JP5 570 aaPredicted RBP13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 TDRD9Q8NDG6 1382 aaKnown RBP13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 DESP17661 470 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 SPECC1LQ69YQ0 1117 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 CCDC9Q9Y3X0 531 aaKnown RBP13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 SEPT14Q6ZU15 432 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 CCDC113Q9H0I3 377 aa13.17□□□□□ -0.3
HDGFL3-201ENST00000299633 PIP4K2AP48426 406 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 CTR9Q6PD62 1173 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 KIF21BO75037 1637 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 UBXN4Q92575 508 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 GBP3Q9H0R5 595 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 PRKRIP1Q9H875 184 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 CEP83Q9Y592 693 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 UBE4AQ14139 1066 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 AKNAQ7Z591 1439 aa13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 FAM177A1Q8N128 213 aaPredicted RBP13.16□□□□□ -0.3
HDGFL3-201ENST00000299633 CCDC174Q6PII3 467 aa13.15□□□□□ -0.3
HDGFL3-201ENST00000299633 STIM1Q13586 685 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms