RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 RUNDC1Q96C34 613 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 TRERF1Q96PN7 1200 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 TNMDQ9H2S6 317 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 DIAPH1O60610 1272 aaKnown RBP17.69■□□□□ 0.42
SCN3B-201ENST00000299333 WASHC4Q2M389 1173 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 HSP90AB4PQ58FF6 505 aa17.69■□□□□ 0.42
SCN3B-201ENST00000299333 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.69■□□□□ 0.42
SCN3B-201ENST00000299333 CTDP1Q9Y5B0 961 aaPredicted RBP17.69■□□□□ 0.42
SCN3B-201ENST00000299333 PAXIP1Q6ZW49 1069 aaPredicted RBP17.68■□□□□ 0.42
SCN3B-201ENST00000299333 KIF7Q2M1P5 1343 aa17.68■□□□□ 0.42
SCN3B-201ENST00000299333 BACH2Q9BYV9 841 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 CCDC18Q5T9S5 1454 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 MCM2P49736 904 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 NINLQ9Y2I6 1382 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 PPFIBP1Q86W92 1011 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 LRRCC1Q9C099 1032 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 PDCP20941 246 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 ZSCAN30Q86W11 494 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 NEUROD6Q96NK8 337 aa17.67■□□□□ 0.42
SCN3B-201ENST00000299333 HNRNPMP52272 730 aaKnown RBP eCLIP17.66■□□□□ 0.42
SCN3B-201ENST00000299333 STK38Q15208 465 aa17.66■□□□□ 0.42
SCN3B-201ENST00000299333 CNTROBQ8N137 903 aa17.66■□□□□ 0.42
SCN3B-201ENST00000299333 ZNHIT6Q9NWK9 470 aaKnown RBP17.66■□□□□ 0.42
SCN3B-201ENST00000299333 VPS37DQ86XT2 251 aa17.66■□□□□ 0.42
SCN3B-201ENST00000299333 PLCD3Q8N3E9 789 aa17.66■□□□□ 0.42
SCN3B-201ENST00000299333 XBP1P17861 261 aa17.66■□□□□ 0.42
SCN3B-201ENST00000299333 SEPT7Q16181 437 aaKnown RBP17.66■□□□□ 0.42
SCN3B-201ENST00000299333 TTC5Q8N0Z6 440 aa17.65■□□□□ 0.42
SCN3B-201ENST00000299333 ZNF396Q96N95 335 aaPredicted RBP17.65■□□□□ 0.42
SCN3B-201ENST00000299333 FSD1Q9BTV5 496 aa17.65■□□□□ 0.42
SCN3B-201ENST00000299333 MCM4P33991 863 aa17.64■□□□□ 0.41
SCN3B-201ENST00000299333 CWC22Q9HCG8 908 aaKnown RBP17.64■□□□□ 0.41
SCN3B-201ENST00000299333 DDX58O95786 925 aaKnown RBP17.64■□□□□ 0.41
SCN3B-201ENST00000299333 CDCA7LQ96GN5 454 aa17.64■□□□□ 0.41
SCN3B-201ENST00000299333 K7ELQ4 463 aaPredicted RBP17.64■□□□□ 0.41
SCN3B-201ENST00000299333 DHX8Q14562 1220 aaKnown RBP17.64■□□□□ 0.41
SCN3B-201ENST00000299333 CNKSR2Q8WXI2 1034 aa17.64■□□□□ 0.41
SCN3B-201ENST00000299333 MTMR7Q9Y216 660 aa17.63■□□□□ 0.41
SCN3B-201ENST00000299333 CLGNO14967 610 aa17.63■□□□□ 0.41
SCN3B-201ENST00000299333 FYB1O15117 783 aa17.63■□□□□ 0.41
SCN3B-201ENST00000299333 FILIP1Q7Z7B0 1213 aa17.63■□□□□ 0.41
SCN3B-201ENST00000299333 UBXN4Q92575 508 aa17.63■□□□□ 0.41
SCN3B-201ENST00000299333 GNAI1P63096 354 aa17.62■□□□□ 0.41
SCN3B-201ENST00000299333 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
SCN3B-201ENST00000299333 TMCO3Q6UWJ1 677 aa17.62■□□□□ 0.41
SCN3B-201ENST00000299333 LRRFIP2Q9Y608 721 aaKnown RBP17.62■□□□□ 0.41
SCN3B-201ENST00000299333 CCDC144AA2RUR9 1427 aa17.62■□□□□ 0.41
SCN3B-201ENST00000299333 EVC2Q86UK5 1308 aa17.61■□□□□ 0.41
SCN3B-201ENST00000299333 PIP4K2AP48426 406 aaPredicted RBP17.61■□□□□ 0.41
SCN3B-201ENST00000299333 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
SCN3B-201ENST00000299333 TSPYL4Q9UJ04 414 aa17.61■□□□□ 0.41
SCN3B-201ENST00000299333 UBTFL1P0CB47 393 aaPredicted RBP17.61■□□□□ 0.41
SCN3B-201ENST00000299333 WDR33Q9C0J8 1336 aaKnown RBP17.6■□□□□ 0.41
SCN3B-201ENST00000299333 ME1P48163 572 aa17.6■□□□□ 0.41
SCN3B-201ENST00000299333 STK3Q13188 491 aa17.6■□□□□ 0.41
SCN3B-201ENST00000299333 SYCP1Q15431 976 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 EFCAB2Q5VUJ9 269 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 CLASRPQ8N2M8 674 aaKnown RBP17.59■□□□□ 0.41
SCN3B-201ENST00000299333 PDCL3Q9H2J4 239 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 CALCOCO1Q9P1Z2 691 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 C1orf115Q9H7X2 142 aa17.59■□□□□ 0.41
SCN3B-201ENST00000299333 GTF2A1P52655 376 aaPredicted RBP17.59■□□□□ 0.41
SCN3B-201ENST00000299333 CBFA2T2O43439 604 aa17.58■□□□□ 0.41
SCN3B-201ENST00000299333 SHTN1A0MZ66 631 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 TXLNAP40222 546 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 KRT85P78386 507 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 SYCE3A1L190 88 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 HMOX1P09601 288 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 CDK5RAP3Q96JB5 506 aa17.58■□□□□ 0.4
SCN3B-201ENST00000299333 XPCQ01831 940 aaPredicted RBP17.57■□□□□ 0.4
SCN3B-201ENST00000299333 CCDC7Q96M83 1385 aa17.57■□□□□ 0.4
SCN3B-201ENST00000299333 ANKRD18AQ8IVF6 992 aa17.57■□□□□ 0.4
SCN3B-201ENST00000299333 ADAMTS8Q9UP79 889 aa17.57■□□□□ 0.4
SCN3B-201ENST00000299333 IQCEQ6IPM2 695 aa17.57■□□□□ 0.4
SCN3B-201ENST00000299333 SURF6O75683 361 aaKnown RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 DNAJC2Q99543 621 aaKnown RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 DACH1Q9UI36 760 aa17.56■□□□□ 0.4
SCN3B-201ENST00000299333 MINK1Q8N4C8 1332 aaPredicted RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 POLR3GO15318 223 aaPredicted RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 CCAR1Q8IX12 1150 aaKnown RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 LUC7LQ9NQ29 371 aaKnown RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 WASHC2CQ9Y4E1 1318 aa17.56■□□□□ 0.4
SCN3B-201ENST00000299333 RBM33Q96EV2 1170 aaKnown RBP17.56■□□□□ 0.4
SCN3B-201ENST00000299333 CNTLNQ9NXG0 1405 aa17.56■□□□□ 0.4
SCN3B-201ENST00000299333 AIMP1Q12904 312 aaKnown RBP17.55■□□□□ 0.4
SCN3B-201ENST00000299333 JMYQ8N9B5 988 aa17.55■□□□□ 0.4
SCN3B-201ENST00000299333 NUP62CLQ9H1M0 184 aa17.55■□□□□ 0.4
SCN3B-201ENST00000299333 CRACR2AQ9BSW2 395 aa17.55■□□□□ 0.4
SCN3B-201ENST00000299333 AKNAQ7Z591 1439 aa17.55■□□□□ 0.4
SCN3B-201ENST00000299333 SART3Q15020 963 aaKnown RBP17.54■□□□□ 0.4
SCN3B-201ENST00000299333 EZRP15311 586 aaKnown RBP17.54■□□□□ 0.4
SCN3B-201ENST00000299333 TANGO6Q9C0B7 1094 aa17.54■□□□□ 0.4
SCN3B-201ENST00000299333 CYP46A1Q9Y6A2 500 aa17.54■□□□□ 0.4
SCN3B-201ENST00000299333 GTF2F1P35269 517 aaKnown RBP eCLIP17.54■□□□□ 0.4
SCN3B-201ENST00000299333 LARP1BQ659C4 914 aaKnown RBP17.54■□□□□ 0.4
SCN3B-201ENST00000299333 CEP57L1Q8IYX8 460 aa17.54■□□□□ 0.4
SCN3B-201ENST00000299333 PTPN14Q15678 1187 aa17.54■□□□□ 0.4
SCN3B-201ENST00000299333 RIC3Q7Z5B4 369 aa17.54■□□□□ 0.4
SCN3B-201ENST00000299333 SPATA32Q96LK8 384 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms