RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 CABLES1Q8TDN4 633 aa9.12□□□□□ -0.95
CD44-204ENST00000279452 TESK2Q96S53 571 aa9.12□□□□□ -0.95
CD44-204ENST00000279452 POLR3AO14802 1390 aaPredicted RBP9.12□□□□□ -0.95
CD44-204ENST00000279452 CDCA8Q53HL2 280 aa9.11□□□□□ -0.95
CD44-204ENST00000279452 HDGFL2Q7Z4V5 671 aaPredicted RBP9.11□□□□□ -0.95
CD44-204ENST00000279452 KTN1Q86UP2 1357 aaKnown RBP9.11□□□□□ -0.95
CD44-204ENST00000279452 COL22A1Q8NFW1 1626 aaPredicted RBP9.1□□□□□ -0.95
CD44-204ENST00000279452 ABTB2Q8N961 1025 aa9.1□□□□□ -0.95
CD44-204ENST00000279452 NGLY1Q96IV0 654 aa9.1□□□□□ -0.95
CD44-204ENST00000279452 TERF2IPQ9NYB0 399 aa9.1□□□□□ -0.95
CD44-204ENST00000279452 USP6P35125 1406 aa9.1□□□□□ -0.95
CD44-204ENST00000279452 TRPM3Q9HCF6 1732 aaPredicted RBP9.1□□□□□ -0.95
CD44-204ENST00000279452 ZBTB7CA1YPR0 619 aa9.09□□□□□ -0.95
CD44-204ENST00000279452 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.09□□□□□ -0.95
CD44-204ENST00000279452 SLC12A5Q9H2X9 1139 aa9.09□□□□□ -0.95
CD44-204ENST00000279452 AFF2P51816 1311 aa9.08□□□□□ -0.96
CD44-204ENST00000279452 SOX12O15370 315 aa9.08□□□□□ -0.96
CD44-204ENST00000279452 ZNF692Q9BU19 519 aaPredicted RBP9.08□□□□□ -0.96
CD44-204ENST00000279452 A0A1W2PP64 1363 aa9.08□□□□□ -0.96
CD44-204ENST00000279452 NINLQ9Y2I6 1382 aa9.08□□□□□ -0.96
CD44-204ENST00000279452 ALS2Q96Q42 1657 aa9.07□□□□□ -0.96
CD44-204ENST00000279452 NLRP6P59044 892 aa9.07□□□□□ -0.96
CD44-204ENST00000279452 ZNF772Q68DY9 489 aaPredicted RBP9.07□□□□□ -0.96
CD44-204ENST00000279452 NLRP13Q86W25 1043 aa9.07□□□□□ -0.96
CD44-204ENST00000279452 TTC21BQ7Z4L5 1316 aa9.06□□□□□ -0.96
CD44-204ENST00000279452 ZC3H6P61129 1189 aaKnown RBP9.06□□□□□ -0.96
CD44-204ENST00000279452 PUS7Q96PZ0 661 aaKnown RBP9.06□□□□□ -0.96
CD44-204ENST00000279452 PRDM11Q9NQV5 511 aa9.06□□□□□ -0.96
CD44-204ENST00000279452 USP21Q9UK80 565 aa9.06□□□□□ -0.96
CD44-204ENST00000279452 CCDC9Q9Y3X0 531 aaKnown RBP9.06□□□□□ -0.96
CD44-204ENST00000279452 BRD4O60885 1362 aaPredicted RBP9.06□□□□□ -0.96
CD44-204ENST00000279452 TTC21AQ8NDW8 1320 aa9.05□□□□□ -0.96
CD44-204ENST00000279452 CPSF1Q10570 1443 aaKnown RBP9.05□□□□□ -0.96
CD44-204ENST00000279452 ABCA3Q99758 1704 aa9.05□□□□□ -0.96
CD44-204ENST00000279452 AKAP12Q02952 1782 aa9.05□□□□□ -0.96
CD44-204ENST00000279452 ANKRD36BQ8N2N9 1353 aa9.05□□□□□ -0.96
CD44-204ENST00000279452 PHRF1Q9P1Y6 1649 aaKnown RBP9.05□□□□□ -0.96
CD44-204ENST00000279452 EDC4Q6P2E9 1401 aaKnown RBP9.05□□□□□ -0.96
CD44-204ENST00000279452 NRKQ7Z2Y5 1582 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 CD163L1Q9NR16 1453 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 CHRNA2Q15822 529 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 POTEAQ6S8J7 498 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 NME9Q86XW9 330 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 RGS17Q9UGC6 210 aaPredicted RBP9.04□□□□□ -0.96
CD44-204ENST00000279452 MON2Q7Z3U7 1717 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 PIK3C2AO00443 1686 aa9.04□□□□□ -0.96
CD44-204ENST00000279452 KIAA0232Q92628 1395 aa9.03□□□□□ -0.96
CD44-204ENST00000279452 SSH2Q76I76 1423 aa9.03□□□□□ -0.96
CD44-204ENST00000279452 MYOM1P52179 1685 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 A0A0G2JS52 829 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 GCP02774 474 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 MYT1Q01538 1121 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 ILDR2Q71H61 639 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 QTRT2Q9H974 415 aaKnown RBP9.02□□□□□ -0.97
CD44-204ENST00000279452 STRN4Q9NRL3 753 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 BTG4Q9NY30 223 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 ZRANB1Q9UGI0 708 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 TRPC5Q9UL62 973 aaPredicted RBP9.02□□□□□ -0.97
CD44-204ENST00000279452 NSD3Q9BZ95 1437 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 MARF1Q9Y4F3 1742 aaKnown RBP9.02□□□□□ -0.97
CD44-204ENST00000279452 USP19O94966 1318 aa9.02□□□□□ -0.97
CD44-204ENST00000279452 PLCH1Q4KWH8 1693 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 FAM83GA6ND36 823 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 RXRBP28702 533 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 FNBP4Q8N3X1 1017 aaPredicted RBP9.01□□□□□ -0.97
CD44-204ENST00000279452 KCNH5Q8NCM2 988 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 COG3Q96JB2 828 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 CRYBG1Q9Y4K1 1723 aa9.01□□□□□ -0.97
CD44-204ENST00000279452 COL14A1Q05707 1796 aaKnown RBP9□□□□□ -0.97
CD44-204ENST00000279452 C11orf95C9JLR9 678 aaPredicted RBP9□□□□□ -0.97
CD44-204ENST00000279452 ZEB1P37275 1124 aaPredicted RBP9□□□□□ -0.97
CD44-204ENST00000279452 EVA1CP58658 441 aa9□□□□□ -0.97
CD44-204ENST00000279452 UNC5CLQ8IV45 518 aa9□□□□□ -0.97
CD44-204ENST00000279452 GGNBP2Q9H3C7 697 aa9□□□□□ -0.97
CD44-204ENST00000279452 KIF7Q2M1P5 1343 aa9□□□□□ -0.97
CD44-204ENST00000279452 SLIT3O75094 1523 aa9□□□□□ -0.97
CD44-204ENST00000279452 SLIT2O94813 1529 aa9□□□□□ -0.97
CD44-204ENST00000279452 RBM6P78332 1123 aaKnown RBP8.99□□□□□ -0.97
CD44-204ENST00000279452 BCL9LQ86UU0 1499 aa8.99□□□□□ -0.97
CD44-204ENST00000279452 OVOS2A0A0J9YW53 1432 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 OVOS2Q6IE36 1432 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 CSB-PGBD3P0DP91 1061 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 CNGB1Q14028 1251 aaPredicted RBP8.98□□□□□ -0.97
CD44-204ENST00000279452 PANK3Q9H999 370 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 USP35Q9P2H5 1018 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 CGNL1Q0VF96 1302 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 CPDO75976 1380 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 USP31Q70CQ4 1352 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 CCDC7Q96M83 1385 aa8.98□□□□□ -0.97
CD44-204ENST00000279452 ATRNO75882 1429 aa8.97□□□□□ -0.97
CD44-204ENST00000279452 GJD4Q96KN9 370 aaPredicted RBP8.97□□□□□ -0.97
CD44-204ENST00000279452 CARD14Q9BXL6 1004 aa8.97□□□□□ -0.97
CD44-204ENST00000279452 NWD2Q9ULI1 1742 aa8.97□□□□□ -0.97
CD44-204ENST00000279452 KIF20BQ96Q89 1820 aa8.96□□□□□ -0.97
CD44-204ENST00000279452 FYB1O15117 783 aa8.96□□□□□ -0.98
CD44-204ENST00000279452 TNNT2P45379 298 aaPredicted RBP8.96□□□□□ -0.98
CD44-204ENST00000279452 VPS72Q15906 364 aa8.96□□□□□ -0.98
CD44-204ENST00000279452 KNSTRNQ9Y448 316 aa8.96□□□□□ -0.98
CD44-204ENST00000279452 WASHC2AQ641Q2 1341 aa8.96□□□□□ -0.98
CD44-204ENST00000279452 NRAPQ86VF7 1730 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms