RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 NRAPQ86VF7 1730 aa20.73■□□□□ 0.91
HMGN3-201ENST00000275036 HAP1P54257 671 aaPredicted RBP20.73■□□□□ 0.91
HMGN3-201ENST00000275036 GJD4Q96KN9 370 aaPredicted RBP20.73■□□□□ 0.91
HMGN3-201ENST00000275036 FAM83GA6ND36 823 aa20.71■□□□□ 0.91
HMGN3-201ENST00000275036 ACEP12821 1306 aa20.71■□□□□ 0.91
HMGN3-201ENST00000275036 ROCK2O75116 1388 aaKnown RBP20.71■□□□□ 0.91
HMGN3-201ENST00000275036 PHRF1Q9P1Y6 1649 aaKnown RBP20.71■□□□□ 0.91
HMGN3-201ENST00000275036 PLEKHG3A1L390 1219 aa20.69■□□□□ 0.9
HMGN3-201ENST00000275036 PAK3O75914 559 aaPredicted RBP20.69■□□□□ 0.9
HMGN3-201ENST00000275036 CABP2Q9NPB3 220 aa20.69■□□□□ 0.9
HMGN3-201ENST00000275036 CCDC61Q9Y6R9 512 aa20.69■□□□□ 0.9
HMGN3-201ENST00000275036 COL14A1Q05707 1796 aaKnown RBP20.69■□□□□ 0.9
HMGN3-201ENST00000275036 TONSLQ96HA7 1378 aa20.68■□□□□ 0.9
HMGN3-201ENST00000275036 PPIP5K1Q6PFW1 1433 aa20.68■□□□□ 0.9
HMGN3-201ENST00000275036 EP400Q96L91 3159 aa20.68■□□□□ 0.9
HMGN3-201ENST00000275036 BRWD3Q6RI45 1802 aa20.67■□□□□ 0.9
HMGN3-201ENST00000275036 SRPK2P78362 688 aaKnown RBP20.66■□□□□ 0.9
HMGN3-201ENST00000275036 VPS72Q15906 364 aa20.66■□□□□ 0.9
HMGN3-201ENST00000275036 ATAD2Q6PL18 1390 aa20.66■□□□□ 0.9
HMGN3-201ENST00000275036 NUTM2GQ5VZR2 741 aa20.64■□□□□ 0.89
HMGN3-201ENST00000275036 NRKQ7Z2Y5 1582 aa20.63■□□□□ 0.89
HMGN3-201ENST00000275036 BTG4Q9NY30 223 aa20.63■□□□□ 0.89
HMGN3-201ENST00000275036 KIAA0232Q92628 1395 aa20.6■□□□□ 0.89
HMGN3-201ENST00000275036 CABP1Q9NZU7 370 aa20.59■□□□□ 0.89
HMGN3-201ENST00000275036 ONECUT3O60422 494 aaPredicted RBP20.58■□□□□ 0.89
HMGN3-201ENST00000275036 SEPT12Q8IYM1 358 aa20.58■□□□□ 0.89
HMGN3-201ENST00000275036 CARD11Q9BXL7 1154 aa20.58■□□□□ 0.89
HMGN3-201ENST00000275036 CCDC9Q9Y3X0 531 aaKnown RBP20.58■□□□□ 0.89
HMGN3-201ENST00000275036 USP6P35125 1406 aa20.58■□□□□ 0.88
HMGN3-201ENST00000275036 SSH2Q76I76 1423 aa20.58■□□□□ 0.88
HMGN3-201ENST00000275036 USP19O94966 1318 aa20.57■□□□□ 0.88
HMGN3-201ENST00000275036 EVC2Q86UK5 1308 aa20.57■□□□□ 0.88
HMGN3-201ENST00000275036 CHRNA2Q15822 529 aa20.57■□□□□ 0.88
HMGN3-201ENST00000275036 PRDM11Q9NQV5 511 aa20.57■□□□□ 0.88
HMGN3-201ENST00000275036 ZC3H6P61129 1189 aaKnown RBP20.56■□□□□ 0.88
HMGN3-201ENST00000275036 ABTB2Q8N961 1025 aa20.56■□□□□ 0.88
HMGN3-201ENST00000275036 PCGF6Q9BYE7 350 aa20.56■□□□□ 0.88
HMGN3-201ENST00000275036 PIK3C2AO00443 1686 aa20.56■□□□□ 0.88
HMGN3-201ENST00000275036 LMO7Q8WWI1 1683 aa20.56■□□□□ 0.88
HMGN3-201ENST00000275036 AKAP12Q02952 1782 aa20.56■□□□□ 0.88
HMGN3-201ENST00000275036 THSD7AQ9UPZ6 1657 aa20.54■□□□□ 0.88
HMGN3-201ENST00000275036 SPATA31A5Q5VU36 1347 aa20.53■□□□□ 0.88
HMGN3-201ENST00000275036 SPATA31A7Q8IWB4 1347 aa20.53■□□□□ 0.88
HMGN3-201ENST00000275036 FAM98CQ17RN3 349 aaKnown RBP20.53■□□□□ 0.88
HMGN3-201ENST00000275036 SBNO2Q9Y2G9 1366 aa20.53■□□□□ 0.88
HMGN3-201ENST00000275036 CAMTA1Q9Y6Y1 1673 aa20.53■□□□□ 0.88
HMGN3-201ENST00000275036 SLIT3O75094 1523 aa20.53■□□□□ 0.88
HMGN3-201ENST00000275036 BRD4O60885 1362 aaPredicted RBP20.52■□□□□ 0.88
HMGN3-201ENST00000275036 CPDO75976 1380 aa20.51■□□□□ 0.87
HMGN3-201ENST00000275036 CPSF1Q10570 1443 aaKnown RBP20.5■□□□□ 0.87
HMGN3-201ENST00000275036 GCP02774 474 aa20.49■□□□□ 0.87
HMGN3-201ENST00000275036 MON2Q7Z3U7 1717 aa20.49■□□□□ 0.87
HMGN3-201ENST00000275036 BLMP54132 1417 aaPredicted RBP20.48■□□□□ 0.87
HMGN3-201ENST00000275036 KRT27Q7Z3Y8 459 aa20.48■□□□□ 0.87
HMGN3-201ENST00000275036 NLRP13Q86W25 1043 aa20.48■□□□□ 0.87
HMGN3-201ENST00000275036 STRN4Q9NRL3 753 aa20.48■□□□□ 0.87
HMGN3-201ENST00000275036 CD163L1Q9NR16 1453 aa20.48■□□□□ 0.87
HMGN3-201ENST00000275036 SPATA31A1Q5TZJ5 1347 aa20.48■□□□□ 0.87
HMGN3-201ENST00000275036 A0A0G2JS52 829 aa20.46■□□□□ 0.87
HMGN3-201ENST00000275036 MYT1Q01538 1121 aa20.46■□□□□ 0.87
HMGN3-201ENST00000275036 TTC21BQ7Z4L5 1316 aa20.46■□□□□ 0.87
HMGN3-201ENST00000275036 COL18A1P39060 1754 aa20.45■□□□□ 0.86
HMGN3-201ENST00000275036 NLRP6P59044 892 aa20.45■□□□□ 0.86
HMGN3-201ENST00000275036 COL5A2P05997 1499 aaPredicted RBP20.44■□□□□ 0.86
HMGN3-201ENST00000275036 FAM182BQ5T319 152 aa20.44■□□□□ 0.86
HMGN3-201ENST00000275036 LARP1Q6PKG0 1096 aaKnown RBP20.44■□□□□ 0.86
HMGN3-201ENST00000275036 CCDC125Q86Z20 511 aa20.44■□□□□ 0.86
HMGN3-201ENST00000275036 CLSPNQ9HAW4 1339 aa20.44■□□□□ 0.86
HMGN3-201ENST00000275036 TESK2Q96S53 571 aa20.43■□□□□ 0.86
HMGN3-201ENST00000275036 ST20-MTHFSA0A0A6YYL1 179 aa20.42■□□□□ 0.86
HMGN3-201ENST00000275036 DEFB132Q7Z7B7 95 aa20.42■□□□□ 0.86
HMGN3-201ENST00000275036 ZNF692Q9BU19 519 aaPredicted RBP20.42■□□□□ 0.86
HMGN3-201ENST00000275036 KTN1Q86UP2 1357 aaKnown RBP20.42■□□□□ 0.86
HMGN3-201ENST00000275036 USP35Q9P2H5 1018 aa20.41■□□□□ 0.86
HMGN3-201ENST00000275036 NFAT5O94916 1531 aa20.41■□□□□ 0.86
HMGN3-201ENST00000275036 USP54Q70EL1 1684 aa20.4■□□□□ 0.86
HMGN3-201ENST00000275036 AATKQ6ZMQ8 1374 aa20.39■□□□□ 0.85
HMGN3-201ENST00000275036 TTC21AQ8NDW8 1320 aa20.39■□□□□ 0.85
HMGN3-201ENST00000275036 ZBTB7CA1YPR0 619 aa20.39■□□□□ 0.85
HMGN3-201ENST00000275036 ZRANB1Q9UGI0 708 aa20.39■□□□□ 0.85
HMGN3-201ENST00000275036 TNS1Q9HBL0 1735 aaKnown RBP20.39■□□□□ 0.85
HMGN3-201ENST00000275036 EVA1CP58658 441 aa20.38■□□□□ 0.85
HMGN3-201ENST00000275036 SLC12A5Q9H2X9 1139 aa20.38■□□□□ 0.85
HMGN3-201ENST00000275036 TIMELESSQ9UNS1 1208 aa20.38■□□□□ 0.85
HMGN3-201ENST00000275036 RGPD5Q99666 1765 aa20.38■□□□□ 0.85
HMGN3-201ENST00000275036 USP47Q96K76 1375 aa20.37■□□□□ 0.85
HMGN3-201ENST00000275036 RGPD1P0DJD0 1748 aa20.37■□□□□ 0.85
HMGN3-201ENST00000275036 BARGINQ6ZT62 677 aa20.37■□□□□ 0.85
HMGN3-201ENST00000275036 AXIN2Q9Y2T1 843 aa20.37■□□□□ 0.85
HMGN3-201ENST00000275036 A0A1W2PP64 1363 aa20.36■□□□□ 0.85
HMGN3-201ENST00000275036 PARP4Q9UKK3 1724 aaKnown RBP20.36■□□□□ 0.85
HMGN3-201ENST00000275036 CRB1P82279 1406 aa20.36■□□□□ 0.85
HMGN3-201ENST00000275036 SOX12O15370 315 aa20.35■□□□□ 0.85
HMGN3-201ENST00000275036 ARHGEF25Q86VW2 580 aa20.35■□□□□ 0.85
HMGN3-201ENST00000275036 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.85
HMGN3-201ENST00000275036 TMC1Q8TDI8 760 aa20.35■□□□□ 0.85
HMGN3-201ENST00000275036 PUS7Q96PZ0 661 aaKnown RBP20.35■□□□□ 0.85
HMGN3-201ENST00000275036 USP31Q70CQ4 1352 aa20.34■□□□□ 0.85
HMGN3-201ENST00000275036 NME9Q86XW9 330 aa20.34■□□□□ 0.85
HMGN3-201ENST00000275036 TCP11L2Q8N4U5 519 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms