RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PMFBP1Q8TBY8 1022 aa18.88■□□□□ 0.61
SS18-201ENST00000269137 C19orf44Q9H6X5 657 aa18.88■□□□□ 0.61
SS18-201ENST00000269137 BLMP54132 1417 aaPredicted RBP18.87■□□□□ 0.61
SS18-201ENST00000269137 WDR43Q15061 677 aaKnown RBP eCLIP18.87■□□□□ 0.61
SS18-201ENST00000269137 TMEM94Q12767 1356 aa18.86■□□□□ 0.61
SS18-201ENST00000269137 TTC21AQ8NDW8 1320 aa18.86■□□□□ 0.61
SS18-201ENST00000269137 ADAMTS8Q9UP79 889 aa18.86■□□□□ 0.61
SS18-201ENST00000269137 CFAP53Q96M91 514 aa18.86■□□□□ 0.61
SS18-201ENST00000269137 PHF8Q9UPP1 1060 aa18.86■□□□□ 0.61
SS18-201ENST00000269137 COG3Q96JB2 828 aa18.85■□□□□ 0.61
SS18-201ENST00000269137 DCCP43146 1447 aa18.85■□□□□ 0.61
SS18-201ENST00000269137 AATKQ6ZMQ8 1374 aa18.84■□□□□ 0.61
SS18-201ENST00000269137 DMRT2Q9Y5R5 561 aa18.84■□□□□ 0.61
SS18-201ENST00000269137 ZRANB1Q9UGI0 708 aa18.82■□□□□ 0.6
SS18-201ENST00000269137 OVOS2A0A0J9YW53 1432 aa18.82■□□□□ 0.6
SS18-201ENST00000269137 OVOS2Q6IE36 1432 aa18.82■□□□□ 0.6
SS18-201ENST00000269137 PNPLA6Q8IY17 1366 aa18.81■□□□□ 0.6
SS18-201ENST00000269137 SHPRHQ149N8 1683 aa18.81■□□□□ 0.6
SS18-201ENST00000269137 ESCO1Q5FWF5 840 aa18.81■□□□□ 0.6
SS18-201ENST00000269137 USP31Q70CQ4 1352 aa18.81■□□□□ 0.6
SS18-201ENST00000269137 POLKQ9UBT6 870 aa18.8■□□□□ 0.6
SS18-201ENST00000269137 C1orf167Q5SNV9 1468 aa18.79■□□□□ 0.6
SS18-201ENST00000269137 MAP2P11137 1827 aaKnown RBP18.79■□□□□ 0.6
SS18-201ENST00000269137 SMG6Q86US8 1419 aaKnown RBP18.79■□□□□ 0.6
SS18-201ENST00000269137 COL3A1P02461 1466 aaPredicted RBP18.79■□□□□ 0.6
SS18-201ENST00000269137 ATF3P18847 181 aa18.79■□□□□ 0.6
SS18-201ENST00000269137 LRRC7Q96NW7 1537 aa18.77■□□□□ 0.6
SS18-201ENST00000269137 CADPS2Q86UW7 1296 aa18.77■□□□□ 0.6
SS18-201ENST00000269137 ZNF335Q9H4Z2 1342 aaPredicted RBP18.77■□□□□ 0.6
SS18-201ENST00000269137 XIRP1Q702N8 1843 aaKnown RBP18.77■□□□□ 0.59
SS18-201ENST00000269137 MST1RQ04912 1400 aa18.77■□□□□ 0.59
SS18-201ENST00000269137 MSH6P52701 1360 aa18.76■□□□□ 0.59
SS18-201ENST00000269137 ORAI2Q96SN7 254 aa18.76■□□□□ 0.59
SS18-201ENST00000269137 PIK3C2AO00443 1686 aa18.76■□□□□ 0.59
SS18-201ENST00000269137 KIF1AQ12756 1690 aa18.76■□□□□ 0.59
SS18-201ENST00000269137 NUDCQ9Y266 331 aa18.75■□□□□ 0.59
SS18-201ENST00000269137 USP54Q70EL1 1684 aa18.75■□□□□ 0.59
SS18-201ENST00000269137 CDK12Q9NYV4 1490 aaPredicted RBP18.75■□□□□ 0.59
SS18-201ENST00000269137 FBLN1P23142 703 aa18.74■□□□□ 0.59
SS18-201ENST00000269137 PSME1Q06323 249 aa18.74■□□□□ 0.59
SS18-201ENST00000269137 GTF3C3Q9Y5Q9 886 aa18.74■□□□□ 0.59
SS18-201ENST00000269137 DIAPH1O60610 1272 aaKnown RBP18.72■□□□□ 0.59
SS18-201ENST00000269137 EMILIN1Q9Y6C2 1016 aa18.72■□□□□ 0.59
SS18-201ENST00000269137 NLRP6P59044 892 aa18.72■□□□□ 0.59
SS18-201ENST00000269137 NGEFQ8N5V2 710 aa18.72■□□□□ 0.59
SS18-201ENST00000269137 PDE3BQ13370 1112 aa18.71■□□□□ 0.59
SS18-201ENST00000269137 ABTB2Q8N961 1025 aa18.71■□□□□ 0.59
SS18-201ENST00000269137 FOXO3O43524 673 aa18.7■□□□□ 0.58
SS18-201ENST00000269137 RRS1Q15050 365 aaKnown RBP18.7■□□□□ 0.58
SS18-201ENST00000269137 PPM1GO15355 546 aaPredicted RBP18.7■□□□□ 0.58
SS18-201ENST00000269137 PAK3O75914 559 aaPredicted RBP18.7■□□□□ 0.58
SS18-201ENST00000269137 U2AF1L5P0DN76 240 aaPredicted RBP18.7■□□□□ 0.58
SS18-201ENST00000269137 U2AF1Q01081 240 aaKnown RBP eCLIP18.7■□□□□ 0.582e-6■■■■□ 21.7
SS18-201ENST00000269137 CCDC146Q8IYE0 955 aa18.7■□□□□ 0.58
SS18-201ENST00000269137 MARF1Q9Y4F3 1742 aaKnown RBP18.69■□□□□ 0.58
SS18-201ENST00000269137 RUNDC1Q96C34 613 aa18.69■□□□□ 0.58
SS18-201ENST00000269137 SENP3-EIF4A1A0A087X0R7 540 aa18.68■□□□□ 0.58
SS18-201ENST00000269137 APAF1O14727 1248 aa18.67■□□□□ 0.58
SS18-201ENST00000269137 KRT28Q7Z3Y7 464 aa18.67■□□□□ 0.58
SS18-201ENST00000269137 TRPM3Q9HCF6 1732 aaPredicted RBP18.66■□□□□ 0.58
SS18-201ENST00000269137 U2SURPO15042 1029 aaKnown RBP18.66■□□□□ 0.58
SS18-201ENST00000269137 IL13P35225 146 aa18.66■□□□□ 0.58
SS18-201ENST00000269137 SALL2Q9Y467 1007 aaPredicted RBP18.66■□□□□ 0.58
SS18-201ENST00000269137 NCBP3Q53F19 620 aaKnown RBP18.65■□□□□ 0.58
SS18-201ENST00000269137 KIF24Q5T7B8 1368 aa18.65■□□□□ 0.58
SS18-201ENST00000269137 ZNF521Q96K83 1311 aa18.65■□□□□ 0.58
SS18-201ENST00000269137 PNNQ9H307 717 aaKnown RBP18.65■□□□□ 0.58
SS18-201ENST00000269137 MAP3K19Q56UN5 1328 aa18.64■□□□□ 0.57
SS18-201ENST00000269137 SBNO1A3KN83 1393 aa18.64■□□□□ 0.57
SS18-201ENST00000269137 PEAK1Q9H792 1746 aa18.64■□□□□ 0.57
SS18-201ENST00000269137 FCHSD2O94868 740 aa18.63■□□□□ 0.57
SS18-201ENST00000269137 NUTM2GQ5VZR2 741 aa18.63■□□□□ 0.57
SS18-201ENST00000269137 PLEKHF1Q96S99 279 aa18.63■□□□□ 0.57
SS18-201ENST00000269137 IQSEC2Q5JU85 1478 aa18.63■□□□□ 0.57
SS18-201ENST00000269137 NPHP3Q7Z494 1330 aa18.63■□□□□ 0.57
SS18-201ENST00000269137 XPCQ01831 940 aaPredicted RBP18.62■□□□□ 0.57
SS18-201ENST00000269137 TCP11L2Q8N4U5 519 aa18.62■□□□□ 0.57
SS18-201ENST00000269137 SLAIN2Q9P270 581 aa18.62■□□□□ 0.57
SS18-201ENST00000269137 FLT4P35916 1363 aa18.62■□□□□ 0.57
SS18-201ENST00000269137 SOX12O15370 315 aa18.61■□□□□ 0.57
SS18-201ENST00000269137 KCNH5Q8NCM2 988 aa18.61■□□□□ 0.57
SS18-201ENST00000269137 BRINP3Q76B58 766 aa18.6■□□□□ 0.57
SS18-201ENST00000269137 NFAT5O94916 1531 aa18.6■□□□□ 0.57
SS18-201ENST00000269137 ALS2Q96Q42 1657 aa18.6■□□□□ 0.57
SS18-201ENST00000269137 USP19O94966 1318 aa18.59■□□□□ 0.57
SS18-201ENST00000269137 SLIT3O75094 1523 aa18.59■□□□□ 0.57
SS18-201ENST00000269137 EIF4A2Q14240 407 aaKnown RBP18.59■□□□□ 0.57
SS18-201ENST00000269137 CCDC27Q2M243 656 aa18.59■□□□□ 0.57
SS18-201ENST00000269137 HSP90AB2PQ58FF8 381 aa18.59■□□□□ 0.57
SS18-201ENST00000269137 PHF23Q9BUL5 403 aaPredicted RBP18.59■□□□□ 0.57
SS18-201ENST00000269137 RSPH6AQ9H0K4 717 aa18.59■□□□□ 0.57
SS18-201ENST00000269137 AMPHP49418 695 aa18.58■□□□□ 0.57
SS18-201ENST00000269137 RTL1A6NKG5 1358 aa18.58■□□□□ 0.56
SS18-201ENST00000269137 GOLGA2Q08379 1002 aa18.58■□□□□ 0.56
SS18-201ENST00000269137 CDCA7LQ96GN5 454 aa18.58■□□□□ 0.56
SS18-201ENST00000269137 PXDNQ92626 1479 aa18.58■□□□□ 0.56
SS18-201ENST00000269137 MAPK8IP3Q9UPT6 1336 aa18.57■□□□□ 0.56
SS18-201ENST00000269137 LTBP4Q8N2S1 1624 aa18.57■□□□□ 0.56
SS18-201ENST00000269137 WWC1Q8IX03 1113 aa18.56■□□□□ 0.56
SS18-201ENST00000269137 HOXC9P31274 260 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms