RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 SCAF1Q9H7N4 1312 aaKnown RBP30.69■■■□□ 2.5
SMARCB1-201ENST00000263121 DCCP43146 1447 aa30.69■■■□□ 2.5
SMARCB1-201ENST00000263121 MTHFSP49914 203 aa30.68■■■□□ 2.5
SMARCB1-201ENST00000263121 BLMP54132 1417 aaPredicted RBP30.68■■■□□ 2.5
SMARCB1-201ENST00000263121 PHF8Q9UPP1 1060 aa30.67■■■□□ 2.5
SMARCB1-201ENST00000263121 TTC21AQ8NDW8 1320 aa30.66■■■□□ 2.5
SMARCB1-201ENST00000263121 XIRP1Q702N8 1843 aaKnown RBP30.66■■■□□ 2.5
SMARCB1-201ENST00000263121 SHPRHQ149N8 1683 aa30.66■■■□□ 2.5
SMARCB1-201ENST00000263121 ZBED9Q6R2W3 1325 aa30.65■■■□□ 2.5
SMARCB1-201ENST00000263121 ZRANB1Q9UGI0 708 aa30.65■■■□□ 2.5
SMARCB1-201ENST00000263121 OVOS2A0A0J9YW53 1432 aa30.64■■■□□ 2.5
SMARCB1-201ENST00000263121 OVOS2Q6IE36 1432 aa30.64■■■□□ 2.5
SMARCB1-201ENST00000263121 WDR43Q15061 677 aaKnown RBP eCLIP30.64■■■□□ 2.5
SMARCB1-201ENST00000263121 COG3Q96JB2 828 aa30.63■■■□□ 2.49
SMARCB1-201ENST00000263121 ADAMTS8Q9UP79 889 aa30.63■■■□□ 2.49
SMARCB1-201ENST00000263121 LRRC7Q96NW7 1537 aa30.62■■■□□ 2.49
SMARCB1-201ENST00000263121 ZNF335Q9H4Z2 1342 aaPredicted RBP30.62■■■□□ 2.49
SMARCB1-201ENST00000263121 C1orf167Q5SNV9 1468 aa30.62■■■□□ 2.49
SMARCB1-201ENST00000263121 DMRT2Q9Y5R5 561 aa30.62■■■□□ 2.49
SMARCB1-201ENST00000263121 AATKQ6ZMQ8 1374 aa30.61■■■□□ 2.49
SMARCB1-201ENST00000263121 CFAP53Q96M91 514 aa30.61■■■□□ 2.49
SMARCB1-201ENST00000263121 ESCO1Q5FWF5 840 aa30.6■■■□□ 2.49
SMARCB1-201ENST00000263121 COL3A1P02461 1466 aaPredicted RBP30.6■■■□□ 2.49
SMARCB1-201ENST00000263121 PIK3C2AO00443 1686 aa30.59■■■□□ 2.49
SMARCB1-201ENST00000263121 MST1RQ04912 1400 aa30.59■■■□□ 2.49
SMARCB1-201ENST00000263121 KIF1AQ12756 1690 aa30.58■■■□□ 2.49
SMARCB1-201ENST00000263121 SMG6Q86US8 1419 aaKnown RBP30.58■■■□□ 2.49
SMARCB1-201ENST00000263121 USP31Q70CQ4 1352 aa30.58■■■□□ 2.49
SMARCB1-201ENST00000263121 USP54Q70EL1 1684 aa30.57■■■□□ 2.48
SMARCB1-201ENST00000263121 ATF3P18847 181 aa30.57■■■□□ 2.48
SMARCB1-201ENST00000263121 PNPLA6Q8IY17 1366 aa30.56■■■□□ 2.48
SMARCB1-201ENST00000263121 MAP2P11137 1827 aaKnown RBP30.56■■■□□ 2.48
SMARCB1-201ENST00000263121 MSH6P52701 1360 aa30.56■■■□□ 2.48
SMARCB1-201ENST00000263121 ORAI2Q96SN7 254 aa30.55■■■□□ 2.48
SMARCB1-201ENST00000263121 POLKQ9UBT6 870 aa30.55■■■□□ 2.48
SMARCB1-201ENST00000263121 CADPS2Q86UW7 1296 aa30.52■■■□□ 2.48
SMARCB1-201ENST00000263121 FBLN1P23142 703 aa30.52■■■□□ 2.48
SMARCB1-201ENST00000263121 MARF1Q9Y4F3 1742 aaKnown RBP30.51■■■□□ 2.47
SMARCB1-201ENST00000263121 CDK12Q9NYV4 1490 aaPredicted RBP30.5■■■□□ 2.47
SMARCB1-201ENST00000263121 PSME1Q06323 249 aa30.47■■■□□ 2.47
SMARCB1-201ENST00000263121 EMILIN1Q9Y6C2 1016 aa30.46■■■□□ 2.47
SMARCB1-201ENST00000263121 TRPM3Q9HCF6 1732 aaPredicted RBP30.45■■■□□ 2.47
SMARCB1-201ENST00000263121 FOXO3O43524 673 aa30.44■■■□□ 2.46
SMARCB1-201ENST00000263121 SENP3-EIF4A1A0A087X0R7 540 aa30.43■■■□□ 2.46
SMARCB1-201ENST00000263121 PAK3O75914 559 aaPredicted RBP30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 NLRP6P59044 892 aa30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 RRS1Q15050 365 aaKnown RBP30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 ABTB2Q8N961 1025 aa30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 DIAPH1O60610 1272 aaKnown RBP30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 NUDCQ9Y266 331 aa30.42■■■□□ 2.46
SMARCB1-201ENST00000263121 PPM1GO15355 546 aaPredicted RBP30.4■■■□□ 2.46
SMARCB1-201ENST00000263121 CCDC146Q8IYE0 955 aa30.4■■■□□ 2.46
SMARCB1-201ENST00000263121 PEAK1Q9H792 1746 aa30.39■■■□□ 2.46
SMARCB1-201ENST00000263121 U2AF1L5P0DN76 240 aaPredicted RBP30.36■■■□□ 2.45
SMARCB1-201ENST00000263121 U2AF1Q01081 240 aaKnown RBP eCLIP30.36■■■□□ 2.45
SMARCB1-201ENST00000263121 KRT28Q7Z3Y7 464 aa30.36■■■□□ 2.45
SMARCB1-201ENST00000263121 NUTM2GQ5VZR2 741 aa30.36■■■□□ 2.45
SMARCB1-201ENST00000263121 XPCQ01831 940 aaPredicted RBP30.35■■■□□ 2.45
SMARCB1-201ENST00000263121 RUNDC1Q96C34 613 aa30.34■■■□□ 2.45
SMARCB1-201ENST00000263121 IQSEC2Q5JU85 1478 aa30.34■■■□□ 2.45
SMARCB1-201ENST00000263121 U2SURPO15042 1029 aaKnown RBP30.33■■■□□ 2.45
SMARCB1-201ENST00000263121 SALL2Q9Y467 1007 aaPredicted RBP30.33■■■□□ 2.45
SMARCB1-201ENST00000263121 ALS2Q96Q42 1657 aa30.33■■■□□ 2.45
SMARCB1-201ENST00000263121 IL13P35225 146 aa30.33■■■□□ 2.45
SMARCB1-201ENST00000263121 MAP3K19Q56UN5 1328 aa30.32■■■□□ 2.44
SMARCB1-201ENST00000263121 APAF1O14727 1248 aa30.32■■■□□ 2.44
SMARCB1-201ENST00000263121 LTBP4Q8N2S1 1624 aa30.32■■■□□ 2.44
SMARCB1-201ENST00000263121 SOX12O15370 315 aa30.31■■■□□ 2.44
SMARCB1-201ENST00000263121 NPHP3Q7Z494 1330 aa30.31■■■□□ 2.44
SMARCB1-201ENST00000263121 SBNO1A3KN83 1393 aa30.31■■■□□ 2.44
SMARCB1-201ENST00000263121 NFAT5O94916 1531 aa30.31■■■□□ 2.44
SMARCB1-201ENST00000263121 PDE3BQ13370 1112 aa30.3■■■□□ 2.44
SMARCB1-201ENST00000263121 BRINP3Q76B58 766 aa30.3■■■□□ 2.44
SMARCB1-201ENST00000263121 NGEFQ8N5V2 710 aa30.3■■■□□ 2.44
SMARCB1-201ENST00000263121 SLAIN2Q9P270 581 aa30.3■■■□□ 2.44
SMARCB1-201ENST00000263121 PXDNQ92626 1479 aa30.29■■■□□ 2.44
SMARCB1-201ENST00000263121 SLIT3O75094 1523 aa30.29■■■□□ 2.44
SMARCB1-201ENST00000263121 KIF24Q5T7B8 1368 aa30.29■■■□□ 2.44
SMARCB1-201ENST00000263121 FLT4P35916 1363 aa30.28■■■□□ 2.44
SMARCB1-201ENST00000263121 ZNF521Q96K83 1311 aa30.28■■■□□ 2.44
SMARCB1-201ENST00000263121 PLEKHF1Q96S99 279 aa30.27■■■□□ 2.44
SMARCB1-201ENST00000263121 USP19O94966 1318 aa30.26■■■□□ 2.43
SMARCB1-201ENST00000263121 DDX17Q92841 729 aaKnown RBP30.26■■■□□ 2.43
SMARCB1-201ENST00000263121 FCHSD2O94868 740 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 EIF4A2Q14240 407 aaKnown RBP30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 HSP90AB2PQ58FF8 381 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 TCP11L2Q8N4U5 519 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 KCNH5Q8NCM2 988 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 LTN1O94822 1766 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 RGPD1P0DJD0 1748 aa30.23■■■□□ 2.43
SMARCB1-201ENST00000263121 PHRF1Q9P1Y6 1649 aaKnown RBP30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 NCBP3Q53F19 620 aaKnown RBP30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 RSPH6AQ9H0K4 717 aa30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 PNNQ9H307 717 aaKnown RBP30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 GTF3C3Q9Y5Q9 886 aa30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 TNS3Q68CZ2 1445 aa30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 RTL1A6NKG5 1358 aa30.22■■■□□ 2.43
SMARCB1-201ENST00000263121 AMPHP49418 695 aa30.21■■■□□ 2.43
SMARCB1-201ENST00000263121 LMOD2Q6P5Q4 547 aa30.19■■■□□ 2.42
SMARCB1-201ENST00000263121 MED1Q15648 1581 aaPredicted RBP30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms