RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 KDM2BQ8NHM5 1336 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 SLFN5Q08AF3 891 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 ANKRD20A12PQ8NF67 263 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 LRPPRCP42704 1394 aaKnown RBP15.35■□□□□ 0.05
VAMP4-201ENST00000236192 RIOK3O14730 519 aaKnown RBP15.35■□□□□ 0.05
VAMP4-201ENST00000236192 NEMFO60524 1076 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 ERBB4Q15303 1308 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 FGD6Q6ZV73 1430 aa15.35■□□□□ 0.05
VAMP4-201ENST00000236192 IGHDP01880 384 aa15.34■□□□□ 0.05
VAMP4-201ENST00000236192 NEK4P51957 841 aa15.34■□□□□ 0.05
VAMP4-201ENST00000236192 OS9Q13438 667 aaPredicted RBP15.34■□□□□ 0.05
VAMP4-201ENST00000236192 KRBA2Q6ZNG9 492 aa15.34■□□□□ 0.05
VAMP4-201ENST00000236192 TTC12Q9H892 705 aaPredicted RBP15.34■□□□□ 0.05
VAMP4-201ENST00000236192 CHGAP10645 457 aaKnown RBP15.34■□□□□ 0.05
VAMP4-201ENST00000236192 DRC1Q96MC2 740 aa15.34■□□□□ 0.05
VAMP4-201ENST00000236192 GCC1Q96CN9 775 aa15.33■□□□□ 0.05
VAMP4-201ENST00000236192 FIBPO43427 364 aa15.33■□□□□ 0.04
VAMP4-201ENST00000236192 ARAP1Q96P48 1450 aa15.33■□□□□ 0.04
VAMP4-201ENST00000236192 VPS37CA5D8V6 355 aaPredicted RBP15.33■□□□□ 0.04
VAMP4-201ENST00000236192 V9GYY5 206 aaPredicted RBP15.33■□□□□ 0.04
VAMP4-201ENST00000236192 C14orf37Q86TY3 774 aa15.33■□□□□ 0.04
VAMP4-201ENST00000236192 CCDC171Q6TFL3 1326 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 H3BQV1 296 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 IFFO2Q5TF58 517 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 PLEKHH1Q9ULM0 1364 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 MVPQ14764 893 aaKnown RBP15.32■□□□□ 0.04
VAMP4-201ENST00000236192 CCDC102AQ96A19 550 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 SEC24BO95487 1268 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 NBPF8Q3BBV2 869 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 TMX1Q9H3N1 280 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 NF2P35240 595 aa15.32■□□□□ 0.04
VAMP4-201ENST00000236192 SARNPP82979 210 aaKnown RBP15.31■□□□□ 0.04
VAMP4-201ENST00000236192 TNMDQ9H2S6 317 aa15.31■□□□□ 0.04
VAMP4-201ENST00000236192 SHTN1A0MZ66 631 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 CHD1LQ86WJ1 897 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 RILPL2Q969X0 211 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.3■□□□□ 0.04
VAMP4-201ENST00000236192 SMC2O95347 1197 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 IRX5P78411 483 aaPredicted RBP15.3■□□□□ 0.04
VAMP4-201ENST00000236192 SF3A1Q15459 793 aaKnown RBP15.3■□□□□ 0.04
VAMP4-201ENST00000236192 CCDC27Q2M243 656 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 ANO2Q9NQ90 1003 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 DHX29Q7Z478 1369 aaKnown RBP15.3■□□□□ 0.04
VAMP4-201ENST00000236192 TSC1Q92574 1164 aa15.3■□□□□ 0.04
VAMP4-201ENST00000236192 PES1O00541 588 aaKnown RBP15.29■□□□□ 0.04
VAMP4-201ENST00000236192 RUNDC1Q96C34 613 aa15.29■□□□□ 0.04
VAMP4-201ENST00000236192 HFM1A2PYH4 1435 aa15.29■□□□□ 0.04
VAMP4-201ENST00000236192 CCDC73Q6ZRK6 1079 aa15.29■□□□□ 0.04
VAMP4-201ENST00000236192 GAS2L3Q86XJ1 694 aa15.29■□□□□ 0.04
VAMP4-201ENST00000236192 NKTRP30414 1462 aaKnown RBP15.28■□□□□ 0.04
VAMP4-201ENST00000236192 SLU7O95391 586 aaKnown RBP15.28■□□□□ 0.04
VAMP4-201ENST00000236192 DCTN1Q14203 1278 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 GBP3Q9H0R5 595 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 CLIP2Q9UDT6 1046 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
VAMP4-201ENST00000236192 NUP62CLQ9H1M0 184 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 BRMS1Q9HCU9 246 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 SECISBP2LQ93073 1101 aaKnown RBP15.28■□□□□ 0.04
VAMP4-201ENST00000236192 GOLIM4O00461 696 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 ZSCAN20P17040 1043 aaPredicted RBP15.28■□□□□ 0.04
VAMP4-201ENST00000236192 MAP3K11Q16584 847 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 CENPHQ9H3R5 247 aa15.28■□□□□ 0.04
VAMP4-201ENST00000236192 DUSP27Q5VZP5 1158 aa15.27■□□□□ 0.04
VAMP4-201ENST00000236192 PPM1EQ8WY54 764 aa15.27■□□□□ 0.03
VAMP4-201ENST00000236192 NUP155O75694 1391 aa15.27■□□□□ 0.03
VAMP4-201ENST00000236192 PPP2R1AP30153 589 aa15.27■□□□□ 0.03
VAMP4-201ENST00000236192 NCOA2Q15596 1464 aa15.26■□□□□ 0.03
VAMP4-201ENST00000236192 MAP2K2P36507 400 aa15.26■□□□□ 0.03
VAMP4-201ENST00000236192 CCDC34Q96HJ3 373 aa15.26■□□□□ 0.03
VAMP4-201ENST00000236192 CT47B1P0C2W7 299 aaPredicted RBP15.26■□□□□ 0.03
VAMP4-201ENST00000236192 MICALL1Q8N3F8 863 aa15.26■□□□□ 0.03
VAMP4-201ENST00000236192 PEG3Q9GZU2 1588 aa15.25■□□□□ 0.03
VAMP4-201ENST00000236192 LRCH2Q5VUJ6 765 aa15.25■□□□□ 0.03
VAMP4-201ENST00000236192 PAIP2Q9BPZ3 127 aaKnown RBP15.25■□□□□ 0.03
VAMP4-201ENST00000236192 LIG1P18858 919 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 GBP6Q6ZN66 633 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 GTF3C6Q969F1 213 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 ERO1AQ96HE7 468 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 ATP6V1AP38606 617 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 ANTXR1Q9H6X2 564 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.24■□□□□ 0.03
VAMP4-201ENST00000236192 HCLS1P14317 486 aaPredicted RBP15.24■□□□□ 0.03
VAMP4-201ENST00000236192 CNPY4Q8N129 248 aa15.24■□□□□ 0.03
VAMP4-201ENST00000236192 CAPN2P17655 700 aa15.23■□□□□ 0.03
VAMP4-201ENST00000236192 ERC2O15083 957 aa15.23■□□□□ 0.03
VAMP4-201ENST00000236192 SNW1Q13573 536 aaKnown RBP15.23■□□□□ 0.03
VAMP4-201ENST00000236192 LRRCC1Q9C099 1032 aa15.23■□□□□ 0.03
VAMP4-201ENST00000236192 CCDC9Q9Y3X0 531 aaKnown RBP15.23■□□□□ 0.03
VAMP4-201ENST00000236192 CASQ1P31415 396 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 URI1O94763 535 aaPredicted RBP15.22■□□□□ 0.03
VAMP4-201ENST00000236192 TRMT1Q9NXH9 659 aaKnown RBP15.22■□□□□ 0.03
VAMP4-201ENST00000236192 POTEB2H3BUK9 544 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 ATP2B3Q16720 1220 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 TSR1Q2NL82 804 aaKnown RBP15.22■□□□□ 0.03
VAMP4-201ENST00000236192 MICALCLQ6ZW33 695 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 FBXW7Q969H0 707 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 TMEM51Q9NW97 253 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 CUX1P39880 1505 aa15.22■□□□□ 0.03
VAMP4-201ENST00000236192 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.21■□□□□ 0.03
VAMP4-201ENST00000236192 TAOK2Q9UL54 1235 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms