RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 PDCL3Q9H2J4 239 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 SEPT11Q9NVA2 429 aaKnown RBP13.23□□□□□ -0.29
MSH6-201ENST00000234420 SLC4A8Q2Y0W8 1093 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 NUCB2P80303 420 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 CCDC73Q6ZRK6 1079 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 ABTB2Q8N961 1025 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 G3BP1Q13283 466 aaKnown RBP eCLIP13.23□□□□□ -0.297e-7■■■■□ 20.1
MSH6-201ENST00000234420 DNAJC2Q99543 621 aaKnown RBP13.23□□□□□ -0.29
MSH6-201ENST00000234420 HDAC5Q9UQL6 1122 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 WASHC2AQ641Q2 1341 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 LIG1P18858 919 aa13.22□□□□□ -0.29
MSH6-201ENST00000234420 USP5P45974 858 aa13.22□□□□□ -0.29
MSH6-201ENST00000234420 EP400NLQ6ZTU2 488 aa13.22□□□□□ -0.29
MSH6-201ENST00000234420 CCDC85AQ96PX6 553 aaPredicted RBP13.22□□□□□ -0.29
MSH6-201ENST00000234420 NAT10Q9H0A0 1025 aaKnown RBP13.22□□□□□ -0.29
MSH6-201ENST00000234420 IRX3P78415 501 aaPredicted RBP13.22□□□□□ -0.29
MSH6-201ENST00000234420 OLFM4Q6UX06 510 aa13.22□□□□□ -0.29
MSH6-201ENST00000234420 CGNL1Q0VF96 1302 aa13.22□□□□□ -0.29
MSH6-201ENST00000234420 LRRFIP1Q32MZ4 808 aaKnown RBP13.21□□□□□ -0.29
MSH6-201ENST00000234420 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
MSH6-201ENST00000234420 SMC3Q9UQE7 1217 aa13.21□□□□□ -0.29
MSH6-201ENST00000234420 SSR1P43307 286 aaKnown RBP13.21□□□□□ -0.29
MSH6-201ENST00000234420 GTF2A1P52655 376 aaPredicted RBP13.21□□□□□ -0.29
MSH6-201ENST00000234420 LRRCC1Q9C099 1032 aa13.21□□□□□ -0.29
MSH6-201ENST00000234420 DDX58O95786 925 aaKnown RBP13.21□□□□□ -0.3
MSH6-201ENST00000234420 PROSER2Q86WR7 435 aaPredicted RBP13.21□□□□□ -0.3
MSH6-201ENST00000234420 WDHD1O75717 1129 aaPredicted RBP13.21□□□□□ -0.3
MSH6-201ENST00000234420 RFX1P22670 979 aa13.21□□□□□ -0.3
MSH6-201ENST00000234420 HSP90AB4PQ58FF6 505 aa13.21□□□□□ -0.3
MSH6-201ENST00000234420 TSPY26PQ9H489 355 aa13.21□□□□□ -0.3
MSH6-201ENST00000234420 CALCOCO1Q9P1Z2 691 aa13.21□□□□□ -0.3
MSH6-201ENST00000234420 CPLX2Q6PUV4 134 aaKnown RBP13.2□□□□□ -0.3
MSH6-201ENST00000234420 FKBP5Q13451 457 aaPredicted RBP13.2□□□□□ -0.3
MSH6-201ENST00000234420 ERLIN2O94905 339 aa13.2□□□□□ -0.3
MSH6-201ENST00000234420 BIN2Q9UBW5 565 aaPredicted RBP13.2□□□□□ -0.3
MSH6-201ENST00000234420 RB1CC1Q8TDY2 1594 aa13.19□□□□□ -0.3
MSH6-201ENST00000234420 NUP155O75694 1391 aa13.19□□□□□ -0.3
MSH6-201ENST00000234420 SDF4Q9BRK5 362 aa13.19□□□□□ -0.3
MSH6-201ENST00000234420 TSPYL4Q9UJ04 414 aa13.19□□□□□ -0.3
MSH6-201ENST00000234420 ZNF76P36508 570 aa13.19□□□□□ -0.3
MSH6-201ENST00000234420 ZFP91Q96JP5 570 aaPredicted RBP13.18□□□□□ -0.3
MSH6-201ENST00000234420 ERLIN1O75477 346 aa13.18□□□□□ -0.3
MSH6-201ENST00000234420 CCP110O43303 1012 aa13.18□□□□□ -0.3
MSH6-201ENST00000234420 CIZ1Q9ULV3 898 aaPredicted RBP13.18□□□□□ -0.3
MSH6-201ENST00000234420 EFCAB2Q5VUJ9 269 aa13.18□□□□□ -0.3
MSH6-201ENST00000234420 KCNA4P22459 653 aa13.18□□□□□ -0.3
MSH6-201ENST00000234420 BRMS1Q9HCU9 246 aa13.18□□□□□ -0.3
MSH6-201ENST00000234420 TTC39AQ5SRH9 613 aa13.17□□□□□ -0.3
MSH6-201ENST00000234420 RALYLQ86SE5 291 aaKnown RBP13.17□□□□□ -0.3
MSH6-201ENST00000234420 REC8O95072 547 aa13.17□□□□□ -0.3
MSH6-201ENST00000234420 CFAP45Q9UL16 551 aa13.17□□□□□ -0.3
MSH6-201ENST00000234420 EIF3AQ14152 1382 aaKnown RBP13.17□□□□□ -0.3
MSH6-201ENST00000234420 EZRP15311 586 aaKnown RBP13.16□□□□□ -0.3
MSH6-201ENST00000234420 CEBPZQ03701 1054 aaKnown RBP13.16□□□□□ -0.3
MSH6-201ENST00000234420 ESPNB1AK53 854 aa13.16□□□□□ -0.3
MSH6-201ENST00000234420 SAFBQ15424 915 aaKnown RBP eCLIP13.16□□□□□ -0.3
MSH6-201ENST00000234420 POLR3GO15318 223 aaPredicted RBP13.16□□□□□ -0.3
MSH6-201ENST00000234420 ZKSCAN1P17029 563 aaPredicted RBP13.16□□□□□ -0.3
MSH6-201ENST00000234420 TMCO3Q6UWJ1 677 aa13.16□□□□□ -0.3
MSH6-201ENST00000234420 PRPF40AO75400 957 aaKnown RBP13.16□□□□□ -0.3
MSH6-201ENST00000234420 SMARCE1Q969G3 411 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 SIL1Q9H173 461 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 CCDC181Q5TID7 509 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 CEP63Q96MT8 703 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 SHTN1A0MZ66 631 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 MAP4K4O95819 1239 aaPredicted RBP13.15□□□□□ -0.3
MSH6-201ENST00000234420 LRRFIP2Q9Y608 721 aaKnown RBP13.15□□□□□ -0.3
MSH6-201ENST00000234420 GTF2F1P35269 517 aaKnown RBP eCLIP13.15□□□□□ -0.32e-7■■■■■ 27.6
MSH6-201ENST00000234420 DDX11Q96FC9 970 aa13.15□□□□□ -0.3
MSH6-201ENST00000234420 RNF187Q5TA31 235 aaPredicted RBP13.15□□□□□ -0.3
MSH6-201ENST00000234420 SSBP05455 408 aaKnown RBP eCLIP13.14□□□□□ -0.31
MSH6-201ENST00000234420 CABP4P57796 275 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 PUS7Q96PZ0 661 aaKnown RBP13.14□□□□□ -0.31
MSH6-201ENST00000234420 C22orf23Q9BZE7 217 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 GRPEL1Q9HAV7 217 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 COG6Q9Y2V7 657 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 ATXN8OSP0DMR3 200 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 RRP1P56182 461 aaKnown RBP13.14□□□□□ -0.31
MSH6-201ENST00000234420 MNAT1P51948 309 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 MAP2K1Q02750 393 aaPredicted RBP13.14□□□□□ -0.31
MSH6-201ENST00000234420 ANKRD18AQ8IVF6 992 aa13.14□□□□□ -0.31
MSH6-201ENST00000234420 SART3Q15020 963 aaKnown RBP13.13□□□□□ -0.31
MSH6-201ENST00000234420 CARMIL2Q6F5E8 1435 aa13.13□□□□□ -0.31
MSH6-201ENST00000234420 TANGO6Q9C0B7 1094 aa13.13□□□□□ -0.31
MSH6-201ENST00000234420 ANKIB1Q9P2G1 1089 aa13.13□□□□□ -0.31
MSH6-201ENST00000234420 LETM1O95202 739 aaPredicted RBP13.13□□□□□ -0.31
MSH6-201ENST00000234420 NUP133Q8WUM0 1156 aa13.13□□□□□ -0.31
MSH6-201ENST00000234420 SLC3A2P08195 630 aaKnown RBP13.12□□□□□ -0.31
MSH6-201ENST00000234420 SMARCA2P51531 1590 aa13.12□□□□□ -0.31
MSH6-201ENST00000234420 ZNF354CQ86Y25 554 aa13.12□□□□□ -0.31
MSH6-201ENST00000234420 NGLY1Q96IV0 654 aa13.12□□□□□ -0.31
MSH6-201ENST00000234420 ZNF622Q969S3 477 aaKnown RBP eCLIP13.11□□□□□ -0.317e-14■■■□□ 18.5
MSH6-201ENST00000234420 CSPG5O95196 566 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 RNF20Q5VTR2 975 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 OSCARQ8IYS5 282 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 COMMD10Q9Y6G5 202 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 FILIP1LQ4L180 1135 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 RABEP1Q15276 862 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 RUFY2Q8WXA3 655 aa13.11□□□□□ -0.31
MSH6-201ENST00000234420 NLRP6P59044 892 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms