RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 U2AF1Q01081 240 aaKnown RBP eCLIP22.87■■□□□ 1.25
VRK1-201ENST00000216639 TOPAZ1Q8N9V7 1692 aa22.86■■□□□ 1.25
VRK1-201ENST00000216639 SLFN5Q08AF3 891 aa22.86■■□□□ 1.25
VRK1-201ENST00000216639 DUSP27Q5VZP5 1158 aa22.86■■□□□ 1.25
VRK1-201ENST00000216639 PLEKHG3A1L390 1219 aa22.85■■□□□ 1.25
VRK1-201ENST00000216639 NCBP3Q53F19 620 aaKnown RBP22.85■■□□□ 1.25
VRK1-201ENST00000216639 COL3A1P02461 1466 aaPredicted RBP22.85■■□□□ 1.25
VRK1-201ENST00000216639 E9PSI1 815 aa22.85■■□□□ 1.25
VRK1-201ENST00000216639 NCKAP5LQ9HCH0 1330 aa22.85■■□□□ 1.25
VRK1-201ENST00000216639 PNPLA6Q8IY17 1366 aa22.84■■□□□ 1.25
VRK1-201ENST00000216639 IQSEC2Q5JU85 1478 aa22.83■■□□□ 1.25
VRK1-201ENST00000216639 DIAPH1O60610 1272 aaKnown RBP22.83■■□□□ 1.25
VRK1-201ENST00000216639 COG3Q96JB2 828 aa22.83■■□□□ 1.25
VRK1-201ENST00000216639 TCP11L2Q8N4U5 519 aa22.82■■□□□ 1.24
VRK1-201ENST00000216639 PNNQ9H307 717 aaKnown RBP22.82■■□□□ 1.24
VRK1-201ENST00000216639 NME9Q86XW9 330 aa22.82■■□□□ 1.24
VRK1-201ENST00000216639 TRMT2AQ8IZ69 625 aaKnown RBP22.82■■□□□ 1.24
VRK1-201ENST00000216639 U2SURPO15042 1029 aaKnown RBP22.81■■□□□ 1.24
VRK1-201ENST00000216639 WWC1Q8IX03 1113 aa22.81■■□□□ 1.24
VRK1-201ENST00000216639 AATKQ6ZMQ8 1374 aa22.81■■□□□ 1.24
VRK1-201ENST00000216639 ACEP12821 1306 aa22.8■■□□□ 1.24
VRK1-201ENST00000216639 KCNA6P17658 529 aa22.79■■□□□ 1.24
VRK1-201ENST00000216639 CCDC27Q2M243 656 aa22.79■■□□□ 1.24
VRK1-201ENST00000216639 POLKQ9UBT6 870 aa22.79■■□□□ 1.24
VRK1-201ENST00000216639 NUTM2FA1L443 756 aa22.78■■□□□ 1.24
VRK1-201ENST00000216639 NKTRP30414 1462 aaKnown RBP22.78■■□□□ 1.24
VRK1-201ENST00000216639 USP6P35125 1406 aa22.77■■□□□ 1.24
VRK1-201ENST00000216639 NRKQ7Z2Y5 1582 aa22.77■■□□□ 1.24
VRK1-201ENST00000216639 TTC21BQ7Z4L5 1316 aa22.77■■□□□ 1.24
VRK1-201ENST00000216639 WDR63Q8IWG1 891 aa22.77■■□□□ 1.23
VRK1-201ENST00000216639 ANKARQ7Z5J8 1434 aa22.76■■□□□ 1.23
VRK1-201ENST00000216639 MAPK8IP3Q9UPT6 1336 aa22.76■■□□□ 1.23
VRK1-201ENST00000216639 PPM1GO15355 546 aaPredicted RBP22.76■■□□□ 1.23
VRK1-201ENST00000216639 NEUROD2Q15784 382 aa22.76■■□□□ 1.23
VRK1-201ENST00000216639 B4GALNT3Q6L9W6 998 aa22.76■■□□□ 1.23
VRK1-201ENST00000216639 MAP2P11137 1827 aaKnown RBP22.75■■□□□ 1.23
VRK1-201ENST00000216639 PHF23Q9BUL5 403 aaPredicted RBP22.75■■□□□ 1.23
VRK1-201ENST00000216639 RRP7AQ9Y3A4 280 aaKnown RBP22.75■■□□□ 1.23
VRK1-201ENST00000216639 CHD2O14647 1828 aaKnown RBP22.75■■□□□ 1.23
VRK1-201ENST00000216639 CDK12Q9NYV4 1490 aaPredicted RBP22.75■■□□□ 1.23
VRK1-201ENST00000216639 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.74■■□□□ 1.23
VRK1-201ENST00000216639 NPHP4O75161 1426 aaPredicted RBP22.73■■□□□ 1.23
VRK1-201ENST00000216639 CCDC136Q96JN2 1154 aa22.73■■□□□ 1.23
VRK1-201ENST00000216639 PLEKHF1Q96S99 279 aa22.73■■□□□ 1.23
VRK1-201ENST00000216639 SPINK5Q9NQ38 1064 aaPredicted RBP22.73■■□□□ 1.23
VRK1-201ENST00000216639 ZRANB1Q9UGI0 708 aa22.73■■□□□ 1.23
VRK1-201ENST00000216639 TTC21AQ8NDW8 1320 aa22.72■■□□□ 1.23
VRK1-201ENST00000216639 FCHSD2O94868 740 aa22.71■■□□□ 1.23
VRK1-201ENST00000216639 NEFMP07197 916 aa22.71■■□□□ 1.23
VRK1-201ENST00000216639 NGDNQ8NEJ9 315 aaKnown RBP22.71■■□□□ 1.23
VRK1-201ENST00000216639 EMILIN1Q9Y6C2 1016 aa22.7■■□□□ 1.22
VRK1-201ENST00000216639 FMN2Q9NZ56 1722 aa22.69■■□□□ 1.22
VRK1-201ENST00000216639 DMRT2Q9Y5R5 561 aa22.69■■□□□ 1.22
VRK1-201ENST00000216639 FBLN1P23142 703 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 PMFBP1Q8TBY8 1022 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 OVOS2A0A0J9YW53 1432 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 OVOS2Q6IE36 1432 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 SSH2Q76I76 1423 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 MYH16Q9H6N6 1097 aa22.68■■□□□ 1.22
VRK1-201ENST00000216639 TMPOP42166 694 aaKnown RBP22.67■■□□□ 1.22
VRK1-201ENST00000216639 PLIN1O60240 522 aa22.66■■□□□ 1.22
VRK1-201ENST00000216639 EXOC6Q8TAG9 804 aa22.66■■□□□ 1.22
VRK1-201ENST00000216639 RGPD8O14715 1765 aaPredicted RBP22.66■■□□□ 1.22
VRK1-201ENST00000216639 TSHZ2Q9NRE2 1034 aa22.65■■□□□ 1.22
VRK1-201ENST00000216639 IL13P35225 146 aa22.65■■□□□ 1.22
VRK1-201ENST00000216639 RRS1Q15050 365 aaKnown RBP22.65■■□□□ 1.22
VRK1-201ENST00000216639 USP31Q70CQ4 1352 aa22.64■■□□□ 1.21
VRK1-201ENST00000216639 LRRC7Q96NW7 1537 aa22.64■■□□□ 1.21
VRK1-201ENST00000216639 NALCNQ8IZF0 1738 aa22.63■■□□□ 1.21
VRK1-201ENST00000216639 RSPH6AQ9H0K4 717 aa22.63■■□□□ 1.21
VRK1-201ENST00000216639 PRKAR2BP31323 418 aa22.62■■□□□ 1.21
VRK1-201ENST00000216639 ADGRL3Q9HAR2 1447 aa22.62■■□□□ 1.21
VRK1-201ENST00000216639 RIPK4P57078 832 aa22.61■■□□□ 1.21
VRK1-201ENST00000216639 IL16Q14005 1332 aa22.6■■□□□ 1.21
VRK1-201ENST00000216639 CRBNQ96SW2 442 aa22.59■■□□□ 1.21
VRK1-201ENST00000216639 TRIM35Q9UPQ4 493 aa22.59■■□□□ 1.21
VRK1-201ENST00000216639 NWD1Q149M9 1564 aa22.58■■□□□ 1.21
VRK1-201ENST00000216639 HMOX1P09601 288 aa22.57■■□□□ 1.2
VRK1-201ENST00000216639 C14orf37Q86TY3 774 aa22.57■■□□□ 1.2
VRK1-201ENST00000216639 PHF8Q9UPP1 1060 aa22.57■■□□□ 1.2
VRK1-201ENST00000216639 CT47B1P0C2W7 299 aaPredicted RBP22.56■■□□□ 1.2
VRK1-201ENST00000216639 NFE2L2Q16236 605 aa22.55■■□□□ 1.2
VRK1-201ENST00000216639 BCAR3O75815 825 aa22.54■■□□□ 1.2
VRK1-201ENST00000216639 PIK3C2AO00443 1686 aa22.54■■□□□ 1.2
VRK1-201ENST00000216639 CALD1Q05682 793 aaKnown RBP22.54■■□□□ 1.2
VRK1-201ENST00000216639 C20orf194Q5TEA3 1177 aa22.54■■□□□ 1.2
VRK1-201ENST00000216639 NLRP6P59044 892 aa22.53■■□□□ 1.2
VRK1-201ENST00000216639 CANXP27824 592 aaKnown RBP22.52■■□□□ 1.2
VRK1-201ENST00000216639 LMOD3Q0VAK6 560 aa22.52■■□□□ 1.2
VRK1-201ENST00000216639 EIF4A2Q14240 407 aaKnown RBP22.52■■□□□ 1.2
VRK1-201ENST00000216639 FANCIQ9NVI1 1328 aa22.52■■□□□ 1.2
VRK1-201ENST00000216639 SBNO1A3KN83 1393 aa22.51■■□□□ 1.19
VRK1-201ENST00000216639 RARSP54136 660 aaKnown RBP22.51■■□□□ 1.19
VRK1-201ENST00000216639 RBM33Q96EV2 1170 aaKnown RBP22.51■■□□□ 1.19
VRK1-201ENST00000216639 USP54Q70EL1 1684 aa22.51■■□□□ 1.19
VRK1-201ENST00000216639 FLT4P35916 1363 aa22.51■■□□□ 1.19
VRK1-201ENST00000216639 SOX12O15370 315 aa22.51■■□□□ 1.19
VRK1-201ENST00000216639 PDE3AQ14432 1141 aa22.51■■□□□ 1.19
VRK1-201ENST00000216639 ABTB2Q8N961 1025 aa22.5■■□□□ 1.19
VRK1-201ENST00000216639 PHACTR3Q96KR7 559 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms