RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	CSK	P41240	450 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	LSS	P48449	732 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	SGSH	P51688	502 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	VAMP7	P51809	220 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	GABRE	P78334	506 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	DAB2	P98082	770 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	DNM1	Q05193	864 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	VAC14	Q08AM6	782 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	ELAVL3	Q14576	367 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	ZNF394	Q53GI3	561 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	C1orf220	Q5T0J3	134 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	C9orf64	Q5T6V5	341 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	ARHGAP40	Q5TG30	622 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CDCP2	Q5VXM1	449 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	MSANTD2	Q6P1R3	559 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	PRPF39	Q86UA1	669 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	SPATS2	Q86XZ4	545 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CCDC117	Q8IWD4	279 aa	Predicted RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	AADAT	Q8N5Z0	425 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	OR4C6	Q8NH72	309 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	OR14C36	Q8NHC7	312 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	TAS1R2	Q8TE23	839 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	AZIN2	Q96A70	460 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CCDC97	Q96F63	343 aa	Predicted RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	LMLN	Q96KR4	655 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	MRGPRX3	Q96LB0	322 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	DDX50	Q9BQ39	737 aa	Known RBP	12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	ULBP1	Q9BZM6	244 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	BLZF1	Q9H2G9	400 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	POLR1B	Q9H9Y6	1135 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CPNE5	Q9HCH3	593 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	EXOC1	Q9NV70	894 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	EVA1B	Q9NVM1	165 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	SSUH2	Q9Y2M2	353 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	CABIN1	Q9Y6J0	2220 aa		12.89	□□□□□ -0.35
CAPN1-223	ENST00000533079	WNT9A	O14904	365 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	RNGTT	O60942	597 aa	Known RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	MOCS3	O95396	460 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	YEATS4	O95619	227 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	ALPPL2	P10696	532 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	PSMD8	P48556	350 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	BST2	Q10589	180 aa	Known RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	CDH18	Q13634	790 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM133B	Q5BKY9	247 aa	Known RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	RNF219	Q5W0B1	726 aa	Predicted RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	BSPRY	Q5W0U4	402 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	CEP135	Q66GS9	1140 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	SHC4	Q6S5L8	630 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	TRIM69	Q86WT6	500 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	SIX6OS1	Q8N1H7	587 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC4A11	Q8NBS3	891 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	KIAA0895	Q8NCT3	520 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	GRAMD1A	Q96CP6	724 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	NAF1	Q96HR8	494 aa	Known RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	ZNF396	Q96N95	335 aa	Predicted RBP	12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	SEMA4C	Q9C0C4	833 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	MTG2	Q9H4K7	406 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	USP29	Q9HBJ7	922 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	LRRC4	Q9HBW1	653 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	TMEM8A	Q9HCN3	771 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	CNGB3	Q9NQW8	809 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	CISH	Q9NSE2	258 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	HESX1	Q9UBX0	185 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	TJP2	Q9UDY2	1190 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	SFMBT1	Q9UHJ3	866 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	RCOR1	Q9UKL0	485 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	PCDHB1	Q9Y5F3	818 aa		12.88	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3D	A0A087WVF3	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3I	A0A087WXS9	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3E	A0A087X179	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3K	A0A087X1G2	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3F	A6NER0	549 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3L	B9A6J9	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	POLR2D	O15514	142 aa	Known RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	KLK10	O43240	276 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	MSI1	O43347	362 aa	Known RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	SIGLEC6	O43699	453 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	CALU	O43852	315 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC28A2	O43868	658 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ACSL4	O60488	711 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	MPO	P05164	745 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3H	P0C7X1	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	CKMT1A	P12532	417 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	KRT13	P13646	458 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	MZF1	P28698	734 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	GTF2H1	P32780	548 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	CSRP3	P50461	194 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	RAD23B	P54727	409 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	PPP2CB	P62714	309 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	PPP2CA	P67775	309 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ADIG	Q0VDE8	80 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	CUL4B	Q13620	913 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	LY6D	Q14210	128 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	STAT4	Q14765	748 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	NFIL3	Q16649	462 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	SETMAR	Q53H47	684 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	PITRM1	Q5JRX3	1037 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3G	Q6DHY5	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBC1D3C	Q6IPX1	549 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	DSG4	Q86SJ6	1040 aa		12.87	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms