RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ALDOCP09972 364 aaKnown RBP8.04□□□□□ -1.12
NUP54-215ENST00000514313 UBL4AP11441 157 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 ZNF20P17024 532 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 RPS6KB1P23443 525 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 HNF1BP35680 557 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 ARF3P61204 181 aaPredicted RBP8.04□□□□□ -1.12
NUP54-215ENST00000514313 ARF1P84077 181 aaKnown RBP8.04□□□□□ -1.12
NUP54-215ENST00000514313 TUBA3CQ13748 450 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 MFSD13AQ14CX5 517 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 CNGA3Q16281 694 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 PCID2Q5JVF3 399 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 MTFR2Q6P444 385 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 TUBA3EQ6PEY2 450 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 PXKQ7Z7A4 578 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 LCORLQ8N3X6 602 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 CXorf38Q8TB03 319 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 ACTRT2Q8TDY3 377 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 KIF1BPQ96EK5 621 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 MACROD1Q9BQ69 325 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 NUDT16L1Q9BRJ7 211 aaKnown RBP8.04□□□□□ -1.12
NUP54-215ENST00000514313 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.04□□□□□ -1.12
NUP54-215ENST00000514313 ADGRE3Q9BY15 652 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 TRIM31Q9BZY9 425 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 GHITMQ9H3K2 345 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 SMYD2Q9NRG4 433 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 PPP1R14DQ9NXH3 145 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 NSMCE4AQ9NXX6 385 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 SEMA5BQ9P283 1151 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 HDAC6Q9UBN7 1215 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 TBC1D29Q9UFV1 150 aa8.04□□□□□ -1.12
NUP54-215ENST00000514313 REXO2Q9Y3B8 237 aaKnown RBP8.04□□□□□ -1.12
NUP54-215ENST00000514313 KDM3AQ9Y4C1 1321 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 GOLGA6L10A0A0M3HER8 536 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 GAGE10A6NGK3 116 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 AHCYL1O43865 530 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 MLYCDO95822 493 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 URODP06132 367 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 CYP4B1P13584 511 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 SFPQP23246 707 aaKnown RBP eCLIP8.03□□□□□ -1.12
NUP54-215ENST00000514313 RPS6KA3P51812 740 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 MRPS35P82673 323 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 NUCB1Q02818 461 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 MPP3Q13368 585 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 BYSLQ13895 437 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 EIF4A2Q14240 407 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 GPR162Q16538 588 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 AARS2Q5JTZ9 985 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 NAPRTQ6XQN6 538 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 RNF144BQ7Z419 303 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 BCDIN3DQ7Z5W3 292 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 ADPRHL1Q8NDY3 354 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 SNRNP27Q8WVK2 155 aaKnown RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 SH3KBP1Q96B97 665 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 NR1H4Q96RI1 486 aaPredicted RBP8.03□□□□□ -1.12
NUP54-215ENST00000514313 SERINC2Q96SA4 455 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 ITPAQ9BY32 194 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 ASIC5Q9NY37 505 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 SLC25A13Q9UJS0 675 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 ST3GAL5Q9UNP4 418 aa8.03□□□□□ -1.12
NUP54-215ENST00000514313 NPIPB15A6NHN6 443 aaPredicted RBP8.02□□□□□ -1.13
NUP54-215ENST00000514313 C17orf100A8MU93 164 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 TTC34A8MYJ7 566 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 PER2O15055 1255 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 HSPA1AP0DMV8 641 aaKnown RBP8.02□□□□□ -1.13
NUP54-215ENST00000514313 HSPA1BP0DMV9 641 aaKnown RBP8.02□□□□□ -1.13
NUP54-215ENST00000514313 HKR1P10072 659 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 ACADMP11310 421 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 CCT8P50990 548 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 CYP4F2P78329 520 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 DCTN2Q13561 401 aaKnown RBP8.02□□□□□ -1.13
NUP54-215ENST00000514313 ERCC6LQ2NKX8 1250 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 AP5B1Q2VPB7 878 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 GALNT7Q86SF2 657 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 BRSK2Q8IWQ3 736 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 CNTROBQ8N137 903 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 ADSSL1Q8N142 457 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 TNIP2Q8NFZ5 429 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 C2CD4CQ8TF44 421 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 CUL5Q93034 780 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 HS6ST2Q96MM7 605 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 SFXN1Q9H9B4 322 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 ASNSD1Q9NWL6 643 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 HCN3Q9P1Z3 774 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 LRIT1Q9P2V4 623 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 OSGIN2Q9Y236 505 aa8.02□□□□□ -1.13
NUP54-215ENST00000514313 TEX22C9J3V5 150 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 CLIC1O00299 241 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 ZNF500O60304 480 aaPredicted RBP8.01□□□□□ -1.13
NUP54-215ENST00000514313 CNTN5O94779 1100 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 PKMP14618 531 aaKnown RBP8.01□□□□□ -1.13
NUP54-215ENST00000514313 DRD4P21917 467 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 RAD52P43351 418 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 VPS41P49754 854 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 PTPAQ15257 358 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 FNDC7Q5VTL7 733 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 NAPEPLDQ6IQ20 393 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 CCDC129Q6ZRS4 1044 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 TTLL10Q6ZVT0 673 aa8.01□□□□□ -1.13
NUP54-215ENST00000514313 TERB1Q8NA31 727 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms