RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PREPLQ4J6C6 727 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 ZNF569Q5MCW4 686 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 ZNF852Q6ZMS4 543 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 RFX8Q6ZV50 586 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 CHST9Q7L1S5 443 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 NT5DC3Q86UY8 548 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 ETFBKMTQ8IXQ9 262 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 C17orf53Q8N3J3 647 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 UBL4BQ8N7F7 174 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 ZNF557Q8N988 423 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 WFDC5Q8TCV5 224 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 RAPGEF5Q92565 580 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 EDAQ92838 391 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 RNF25Q96BH1 459 aaPredicted RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 PNKPQ96T60 521 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 SLC2A11Q9BYW1 496 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 CWC15Q9P013 229 aaKnown RBP15.4■□□□□ 0.06
NUP54-213ENST00000513352 DNAI1Q9UI46 699 aa15.4■□□□□ 0.06
NUP54-213ENST00000513352 CCDC66A2RUB6 948 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 TBC1D3BA6NDS4 549 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 KDELR1P24390 212 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 CTNNA2P26232 953 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 EIF2DP41214 584 aaKnown RBP15.39■□□□□ 0.05
NUP54-213ENST00000513352 GALK1P51570 392 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 SIGLEC14Q08ET2 396 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 GRSF1Q12849 480 aaKnown RBP eCLIP15.39■□□□□ 0.05
NUP54-213ENST00000513352 DPYSL3Q14195 570 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 C5orf22Q49AR2 442 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 C1orf228Q6PIY5 440 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 ZNF354CQ86Y25 554 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 CSPG4P5Q96PW8 444 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 MUC3BQ9H195 1237 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 TBC1D17Q9HA65 648 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 GGA2Q9UJY4 613 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 NEU3Q9UQ49 428 aa15.39■□□□□ 0.05
NUP54-213ENST00000513352 MRPS17Q9Y2R5 130 aaKnown RBP15.39■□□□□ 0.05
NUP54-213ENST00000513352 MIF4GDA9UHW6 222 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 KAT7O95251 611 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 PABPC1P11940 636 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 ERCC2P18074 760 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 AMPD1P23109 780 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 MSNP26038 577 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 HOXC13P31276 330 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 CD70P32970 193 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 MAPKAPK2P49137 400 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 OXCT1P55809 520 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 RWDD2BP57060 319 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 LMAN2Q12907 356 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 FSCBQ5H9T9 825 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 C6orf118Q5T5N4 469 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 RNF219Q5W0B1 726 aaPredicted RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 ASTLQ6HA08 431 aaPredicted RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 NUDT18Q6ZVK8 323 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 ANKS1BQ7Z6G8 1248 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 RFX6Q8HWS3 928 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 KATNAL2Q8IYT4 538 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 RTL3Q8N8U3 475 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 FLCNQ8NFG4 579 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 FIBINQ8TAL6 211 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 RBM41Q96IZ5 413 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 ZNF670Q9BS34 389 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 MAK16Q9BXY0 300 aaKnown RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 CIPCQ9C0C6 399 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 TMEM248Q9NWD8 314 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 KIAA1522Q9P206 1035 aaPredicted RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 RCOR3Q9P2K3 495 aaPredicted RBP15.38■□□□□ 0.05
NUP54-213ENST00000513352 PCDHA3Q9Y5H8 950 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 ATG2BQ96BY7 2078 aa15.38■□□□□ 0.05
NUP54-213ENST00000513352 TTC28Q96AY4 2481 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 TNFRSF10AO00220 468 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 ZRANB2O95218 330 aaKnown RBP eCLIP15.37■□□□□ 0.05
NUP54-213ENST00000513352 HLA-FP30511 346 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 CETN2P41208 172 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 CSKP41240 450 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 GRIA2P42262 883 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 HCAR3P49019 387 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 ARSEP51690 589 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 SEC13P55735 322 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 MESP2Q0VG99 397 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 DPYSQ14117 519 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 LLGL1Q15334 1064 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 RPS6KA1Q15418 735 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 GEN1Q17RS7 908 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 HS1BP3Q53T59 392 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 KAZNQ674X7 775 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 CXorf57Q6NSI4 855 aaKnown RBP15.37■□□□□ 0.05
NUP54-213ENST00000513352 TMCO3Q6UWJ1 677 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 TRIM67Q6ZTA4 783 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 SETD3Q86TU7 594 aaPredicted RBP15.37■□□□□ 0.05
NUP54-213ENST00000513352 NLRP14Q86W24 1093 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 SUGP1Q8IWZ8 645 aaKnown RBP15.37■□□□□ 0.05
NUP54-213ENST00000513352 RCOR2Q8IZ40 523 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 AHI1Q8N157 1196 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 SLC35F6Q8N357 371 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 TERB1Q8NA31 727 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 WFIKKN2Q8TEU8 576 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 SPON2Q9BUD6 331 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 FOXQ1Q9C009 403 aa15.37■□□□□ 0.05
NUP54-213ENST00000513352 FBRSL1Q9HCM7 1045 aaKnown RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms