RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CRY1Q16526 586 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 UGT8Q16880 541 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ERCC6LQ2NKX8 1250 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KBTBD12Q3ZCT8 623 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 MBNL2Q5VZF2 373 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KAZNQ674X7 775 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ACAD10Q6JQN1 1059 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LIN54Q6MZP7 749 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CNKSR3Q6P9H4 555 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CNSTQ6PJW8 725 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.77□□□□□ -1.659e-13■■■■■ 69.7
SF3B1-202ENST00000409915 USP49Q70CQ1 688 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RAPH1Q70E73 1250 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 Q7L0L9 218 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ZNF765Q7L2R6 523 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ARHGAP22Q7Z5H3 698 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 SPRED2Q7Z698 418 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RSPH3Q86UC2 560 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CABP7Q86V35 215 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 FAM228AQ86W67 206 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RHPN2Q8IUC4 686 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 HID1Q8IV36 788 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 OXR1Q8N573 874 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TOR1AIP2Q8NFQ8 470 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 LILRB1Q8NHL6 650 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 GOT1L1Q8NHS2 421 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 B4GALNT2Q8NHY0 566 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ERMNQ8TAM6 284 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 FAM71BQ8TC56 605 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 NEK9Q8TD19 979 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 STON2Q8WXE9 905 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ST8SIA4Q92187 359 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 C16orf45Q96MC5 204 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 NLRP4Q96MN2 994 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CLIC6Q96NY7 704 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KRTAP4-6Q9BYQ5 205 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 IFIH1Q9BYX4 1025 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TSGA10Q9BZW7 698 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 POLR3FQ9H1D9 316 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ADAMTS10Q9H324 1103 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KCTD10Q9H3F6 313 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 DHX33Q9H6R0 707 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KIF9Q9HAQ2 790 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TUFT1Q9NNX1 390 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CCDC177Q9NQR7 707 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CATSPERZQ9NTU4 200 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 SUCLA2Q9P2R7 463 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 EIF2B4Q9UI10 523 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 TMEFF2Q9UIK5 374 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 MSRAQ9UJ68 235 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 GDF2Q9UK05 429 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 RPS6KA6Q9UK32 745 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PCDHGB4Q9UN71 923 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 YBX2Q9Y2T7 364 aaKnown RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PCDHGC5Q9Y5F6 944 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 GMEB1Q9Y692 573 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 ZFP37Q9Y6Q3 630 aaPredicted RBP4.77□□□□□ -1.65
SF3B1-202ENST00000409915 CDH23Q9H251 3354 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 KAT6AQ92794 2004 aa4.77□□□□□ -1.65
SF3B1-202ENST00000409915 PHLPP2Q6ZVD8 1323 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 A0A087WZ62 844 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 A0A0B4J269 797 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 IGKV6-21A0A0C4DH24 114 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 NPHP3-ACAD11A0A0J9YXS1 232 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 A0A1W2PPC1 479 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 hCG_1807616A0A1W2PRN6 198 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 ARHGEF35A5YM69 484 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 TMEM221A6NGB7 291 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 SRRM3A6NNA2 597 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-202ENST00000409915 H3BQF6 201 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 FSCN2O14926 492 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 MAGEB2O15479 319 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 HTRA2O43464 458 aaPredicted RBP4.76□□□□□ -1.65
SF3B1-202ENST00000409915 CAVIN2O95810 425 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 BMP15O95972 392 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 TUBBP07437 444 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 CTSBP07858 339 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 PFKMP08237 780 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 EPXP11678 715 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 ACTN1P12814 892 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 KRT10P13645 584 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 MTHFD2P13995 350 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 BRAFP15056 766 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 IL11P20809 199 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 EPHA1P21709 976 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 MAOBP27338 520 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 RPA1P27694 616 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 TMOD1P28289 359 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 ATP5DP30049 168 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 SLC7A1P30825 629 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 LTBRP36941 435 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 CD86P42081 329 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 GATMP50440 423 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 GPC3P51654 580 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 AFF1P51825 1210 aaKnown RBP4.76□□□□□ -1.65
SF3B1-202ENST00000409915 CDR1P51861 262 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 MAP2K6P52564 334 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 KIF11P52732 1056 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 VAMP2P63027 116 aa4.76□□□□□ -1.65
SF3B1-202ENST00000409915 RNF4P78317 190 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms