RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 APEX2Q9UBZ4 518 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 SAR1BQ9Y6B6 198 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 EXOC1LA0A1B0GW35 172 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ANKDD1BA6NHY2 528 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TXNDC9O14530 226 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FTCDO95954 541 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TMCO4Q5TGY1 634 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TTI2Q6NXR4 508 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 SLC44A2Q8IWA5 706 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CBWD1Q9BRT8 395 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FICDQ9BVA6 458 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 GJB4Q9NTQ9 266 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 WBP1LQ9NX94 342 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TSPAN16Q9UKR8 245 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 A0A087X0T9 212 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 A0A1W2PQ27 194 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 A0A1W2PQ64 194 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 A0A1W2PQD8 194 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ZSCAN5CA6NGD5 496 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 MLLT3P42568 568 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FMO5P49326 533 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 EPHB4P54760 987 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 SGCBQ16585 318 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 COL13A1Q5TAT6 717 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ICE2Q659A1 982 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CAPRIN2Q6IMN6 1127 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FBXO38Q6PIJ6 1188 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CNSTQ6PJW8 725 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 PPM1NQ8N819 430 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 AVL9Q8NBF6 648 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TSPAN18Q96SJ8 248 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TTLL2Q9BWV7 592 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 UBE2ZQ9H832 354 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FBRSL1Q9HCM7 1045 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 IGSF9Q9P2J2 1179 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ENTPD4Q9Y227 616 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 MROH1Q8NDA8 1641 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 NEURL4Q96JN8 1562 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 BCL9LQ86UU0 1499 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 PGRMC1O00264 195 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TIMM44O43615 452 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 STBD1O95210 358 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TYMPP19971 482 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TYK2P29597 1187 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 GJA8P48165 433 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 SMTNL2Q2TAL5 461 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 VSTM1Q6UX27 236 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 PPWD1Q96BP3 646 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 WRAP53Q9BUR4 548 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TRIM9Q9C026 710 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 N6AMT1Q9Y5N5 214 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 MGAT4DA6NG13 374 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 APBB3O95704 486 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 FYNP06241 537 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 APRTP07741 180 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 GJA1P17302 382 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TKTP29401 623 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 PCK1P35558 622 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 NEK2P51955 445 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ATAD3BQ5T9A4 648 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 OR2W6PQ8NHA6 318 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 CAAP1Q9H8G2 361 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TBC1D13Q9NVG8 400 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 H2AFY2Q9P0M6 372 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 EPS15L1Q9UBC2 864 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 TRPC4Q9UBN4 977 aa9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 RGS17Q9UGC6 210 aaPredicted RBP9.42□□□□□ -0.9
LIMCH1-202ENST00000381753 ANO9A1A5B4 782 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TM7SF2O76062 418 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TCP1P17987 556 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 CCT5P48643 541 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 GPS1Q13098 491 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 HSDL1Q3SXM5 330 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 BOLA3Q53S33 107 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TCEAL5Q5H9L2 206 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 EMC10Q5UCC4 262 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 IL27RAQ6UWB1 636 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 CCDC185Q8N715 623 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 SYT2Q8N9I0 419 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 PHF21AQ96BD5 680 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 ACOX2Q99424 681 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TBCDQ9BTW9 1192 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TKTL2Q9H0I9 626 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 NSMCE4AQ9NXX6 385 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 SH3BGRL2Q9UJC5 107 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 HNRNPA1P09651 372 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 GNPDA1P46926 289 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 AVPR1BP47901 424 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 PLTPP55058 493 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TRIM32Q13049 653 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TSNAXIP1Q2TAA8 658 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 FAM35AQ86V20 835 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 RCOR2Q8IZ40 523 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 DIS3LQ8TF46 1054 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TMEM121Q9BTD3 319 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 PADI2Q9Y2J8 665 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 E9PCH4 1651 aa9.41□□□□□ -0.9
LIMCH1-202ENST00000381753 TRIM49BA6NDI0 452 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms