RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 EPAS1Q99814 870 aa11.07□□□□□ -0.64
UBR4-208ENST00000459947 POLMQ9NP87 494 aaPredicted RBP11.07□□□□□ -0.64
UBR4-208ENST00000459947 COL4A3Q01955 1670 aa11.07□□□□□ -0.64
UBR4-208ENST00000459947 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 PAGE1O75459 146 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 HNRNPLP14866 589 aaKnown RBP eCLIP11.06□□□□□ -0.64
UBR4-208ENST00000459947 FECHP22830 423 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 PCK1P35558 622 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 SOX9P48436 509 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 ZNF177Q13360 481 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 TCEAL1Q15170 157 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 FAM133BQ5BKY9 247 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 MFN1Q8IWA4 741 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 NIPA2Q8N8Q9 360 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 CCDC112Q8NEF3 446 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 USP33Q8TEY7 942 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 FAM172AQ8WUF8 416 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 PIWIL1Q96J94 861 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 TKTL2Q9H0I9 626 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 NENFQ9UMX5 172 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 TMEM191CA6NGB0 347 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 MAN1A1P33908 653 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 HADHQ16836 314 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 CCDC14Q49A88 953 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 SYT13Q7L8C5 426 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 SETD3Q86TU7 594 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 C1orf210Q8IVY1 113 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 PHTF2Q8N3S3 785 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 ST13P5Q8NFI4 369 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 TTC8Q8TAM2 541 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 NHEJ1Q9H9Q4 299 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 PRDM16Q9HAZ2 1276 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 STIM2Q9P246 746 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 PABPC1P11940 636 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 ADRA1BP35368 520 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 ARHGAP25P42331 645 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 MAPKAPK2P49137 400 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 GEMIN4P57678 1058 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 KDSRQ06136 332 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 STARD3Q14849 445 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 C6orf118Q5T5N4 469 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 KIAA0907Q7Z7F0 614 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 METTL3Q86U44 580 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 RPRD1AQ96P16 312 aaPredicted RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 PRMT1Q99873 361 aaKnown RBP11.06□□□□□ -0.64
UBR4-208ENST00000459947 MMP17Q9ULZ9 603 aa11.06□□□□□ -0.64
UBR4-208ENST00000459947 SYNJ2BP-COX16A0A087WUM0 186 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 TMCO5BA8MYB1 307 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 FGF10O15520 208 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 CISD3P0C7P0 127 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 HOXD9P28356 352 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 RFC1P35251 1148 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 DGKEP52429 567 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 RAP1GAP2Q684P5 730 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 TXNDC11Q6PKC3 985 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 SLFN11Q7Z7L1 901 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 GAS2L3Q86XJ1 694 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 ADAM32Q8TC27 787 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 TBC1D31Q96DN5 1066 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 CATSPERBQ9H7T0 1116 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 PIGVQ9NUD9 493 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 COX16Q9P0S2 106 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 SUN2Q9UH99 717 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 A0A087X0T9 212 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 MYO1FO00160 1098 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 PRPSAP2O60256 369 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 PDGFBP01127 241 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 EGFP01133 1207 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 SRPRAP08240 638 aaKnown RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 FAM228BP0C875 321 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 L1CAMP32004 1257 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 NNMTP40261 264 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 PLK1P53350 603 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 ST8SIA6P61647 398 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 AUHQ13825 339 aaKnown RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 ASTE1Q2TB18 679 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 BOLA3Q53S33 107 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 JOSD2Q8TAC2 188 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 OLIG1Q8TAK6 271 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 GGA2Q9UJY4 613 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 SHISA7A6NL88 538 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 DRGXA6NNA5 263 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 H0Y626 953 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 CCP110O43303 1012 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 MTA2O94776 668 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 APBB3O95704 486 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 POLR2EP19388 210 aaKnown RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 VCPP55072 806 aaKnown RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 KRT83P78385 493 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 IFI16Q16666 785 aaKnown RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 OTUD1Q5VV17 481 aaPredicted RBP11.05□□□□□ -0.64
UBR4-208ENST00000459947 NADSYN1Q6IA69 706 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 TC2NQ8N9U0 490 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 TEKT4Q8WW24 435 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 CFAP57Q96MR6 1250 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 ZYG11BQ9C0D3 744 aa11.05□□□□□ -0.64
UBR4-208ENST00000459947 IGLV3-10A0A075B6K4 115 aa11.04□□□□□ -0.64
UBR4-208ENST00000459947 ADCY5O95622 1261 aa11.04□□□□□ -0.64
UBR4-208ENST00000459947 RHOQP17081 205 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms