RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 CBWD6Q4V339 395 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 CBWD3Q5JTY5 395 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 CBWD5Q5RIA9 395 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 YTHDF3Q7Z739 585 aaKnown RBP12.01□□□□□ -0.49
LINC00538-201ENST00000626109 ESX1Q8N693 406 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 URGCPQ8TCY9 931 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 CENPIQ92674 756 aaPredicted RBP12.01□□□□□ -0.49
LINC00538-201ENST00000626109 GAD1Q99259 594 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 SH3GL1Q99961 368 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 SYT11Q9BT88 431 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 DDX18Q9NVP1 670 aaKnown RBP12.01□□□□□ -0.49
LINC00538-201ENST00000626109 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC00538-201ENST00000626109 SPATA7Q9P0W8 599 aa12.01□□□□□ -0.49
LINC00538-201ENST00000626109 H0YGN5 161 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 TTI1O43156 1089 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 UPP2O95045 317 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 FGFR1P11362 822 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 TNNI1P19237 187 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 POLD2P49005 469 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 DRG2P55039 364 aaKnown RBP12□□□□□ -0.49
LINC00538-201ENST00000626109 GPC5P78333 572 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 CTAG1AP78358 180 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 DR1Q01658 176 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 GUCY1A3Q02108 690 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 IFFO1Q0D2I5 559 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 SMAD1Q15797 465 aaKnown RBP12□□□□□ -0.49
LINC00538-201ENST00000626109 ARHGAP44Q17R89 818 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 C11orf63Q6NUN7 778 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 HOOK3Q86VS8 718 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 WDR49Q8IV35 697 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 TOP1MTQ969P6 601 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 SLC9A7Q96T83 725 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 FMO2Q99518 471 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 CGRRF1Q99675 332 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 TRIM56Q9BRZ2 755 aaKnown RBP12□□□□□ -0.49
LINC00538-201ENST00000626109 TRIM7Q9C029 511 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 UBE2TQ9NPD8 197 aaPredicted RBP12□□□□□ -0.49
LINC00538-201ENST00000626109 ZC3H7BQ9UGR2 993 aaKnown RBP12□□□□□ -0.49
LINC00538-201ENST00000626109 DERAQ9Y315 318 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 NFS1Q9Y697 457 aa12□□□□□ -0.49
LINC00538-201ENST00000626109 ARL5CA6NH57 179 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 EIF3FO00303 357 aaPredicted RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 PODXLO00592 558 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 EIF1AYO14602 144 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 MEFVO15553 781 aaPredicted RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 FAM107AO95990 144 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TMEM191BP0C7N4 346 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TRIM49P0CI25 452 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TRIM49CP0CI26 452 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 KCNE1P15382 129 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 USP8P40818 1118 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 WNT7BP56706 349 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 DHX9Q08211 1270 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TMEM132DQ14C87 1099 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 XKR4Q5GH76 650 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 GLRA4Q5JXX5 417 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 JADE1Q6IE81 842 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ALKAL1Q6UXT8 129 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TMC3Q7Z5M5 1100 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CCDC91Q7Z6B0 441 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ZFP42Q96MM3 310 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ERP44Q9BS26 406 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 UBE2OQ9C0C9 1292 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 GPR88Q9GZN0 384 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TMEM117Q9H0C3 514 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SMOC1Q9H4F8 434 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CNOT10Q9H9A5 744 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ITM2CQ9NQX7 267 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CTTNBP2NLQ9P2B4 639 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 RALGAPA2Q2PPJ7 1873 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 INPPL1O15357 1258 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SLC7A4O43246 635 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 RTN2O75298 545 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SLITRK5O94991 958 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TNNC2P02585 160 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 NFICP08651 508 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 USP17L7P0C7H9 530 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CNTFP26441 200 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CHRNA3P32297 505 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SCNN1GP51170 649 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 AP3M2P53677 418 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 PPP2R2AP63151 447 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 DLG4P78352 724 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 TFAMQ00059 246 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ZNF844Q08AG5 666 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 GRIK3Q13003 919 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 NOMO2Q5JPE7 1267 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CLLU1OSQ5K130 101 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SEL1L2Q5TEA6 688 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 LPCAT2Q7L5N7 544 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 DNAAF5Q86Y56 855 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SLC7A5P1Q8MH63 180 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CRIPAKQ8N1N5 446 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 LINC00469Q8N7U9 141 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ANKK1Q8NFD2 765 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 SPDYE1Q8NFV5 336 aaPredicted RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 PLEKHO2Q8TD55 490 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ZNF473Q8WTR7 871 aaKnown RBP11.99□□□□□ -0.49
LINC00538-201ENST00000626109 ANKRD36BP1Q96IX9 119 aa11.99□□□□□ -0.49
LINC00538-201ENST00000626109 CCT8L2Q96SF2 557 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms