RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 AHI1Q8N157 1196 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 ITM2CQ9NQX7 267 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 TMEM74BQ9NUR3 256 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 SLC6A14Q9UN76 642 aa19.83■□□□□ 0.77
CCDC28A-203ENST00000617445 TYW5A2RUC4 315 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 CDX4O14627 284 aaPredicted RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 CAPN9O14815 690 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 ATP5BP06576 529 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 SERPINF2P08697 491 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 PON1P27169 355 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 CD6P30203 668 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 SNX16P57768 344 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 MAN2A1Q16706 1144 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 FAM133BQ5BKY9 247 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 CT47A1Q5JQC4 288 aaPredicted RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 SYCP2LQ5T4T6 812 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 TMEM215Q68D42 235 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 SERPINA13PQ6UXR4 307 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 TMPRSS6Q8IU80 811 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 DQX1Q8TE96 717 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 SHC3Q92529 594 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 PRCCQ92733 491 aaPredicted RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 FBRSQ9HAH7 460 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 POPDC2Q9HBU9 364 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 USP36Q9P275 1121 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 GGA2Q9UJY4 613 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 NFE2L3Q9Y4A8 694 aa19.82■□□□□ 0.76
CCDC28A-203ENST00000617445 KCNK5O95279 499 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 GLI1P08151 1106 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 C7P10643 843 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 PABPC1P11940 636 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 USP8P40818 1118 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 YWHAZP63104 245 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 PTK2Q05397 1052 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 ARHGAP44Q17R89 818 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 CHST9Q7L1S5 443 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 CCDC117Q8IWD4 279 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 HJURPQ8NCD3 748 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 SIPA1Q96FS4 1042 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC39A13Q96H72 371 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 FCRL2Q96LA5 508 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 MKRN2Q9H000 416 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 ABCB8Q9NUT2 735 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 SUSD2Q9UGT4 822 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 PCDHGC3Q9UN70 934 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 NAALADL1Q9UQQ1 740 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 PCNX2A6NKB5 2137 aa19.81■□□□□ 0.76
CCDC28A-203ENST00000617445 BECN2A8MW95 431 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 E5RJQ4 531 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 PAPSS1O43252 624 aaPredicted RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 TBL1XO60907 577 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 IGLV3-19P01714 112 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 EPHX1P07099 455 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 DLDP09622 509 aaKnown RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 ACADMP11310 421 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 CSRP1P21291 193 aaKnown RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 GFPT1Q06210 699 aaPredicted RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 CAMK2GQ13555 558 aaPredicted RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 FNDC3BQ53EP0 1204 aaKnown RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 WDR45BQ5MNZ6 344 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 RFWD3Q6PCD5 774 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 GJB7Q6PEY0 223 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 CLEC17AQ6ZS10 378 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 ADIPOR2Q86V24 386 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 CADM4Q8NFZ8 388 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 FIBINQ8TAL6 211 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 SORCS1Q8WY21 1168 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 NOX5Q96PH1 765 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC6A17Q9H1V8 727 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 LHX5Q9H2C1 402 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 TMEM245Q9H330 911 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 ASNSD1Q9NWL6 643 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 WSB2Q9NYS7 404 aaPredicted RBP19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC12A6Q9UHW9 1150 aa19.8■□□□□ 0.76
CCDC28A-203ENST00000617445 APOEP02649 317 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 CFIP05156 583 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 GNSP15586 552 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 ENGP17813 658 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 POLR2EP19388 210 aaKnown RBP19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 KCNA4P22459 653 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 PRKCHP24723 683 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC6A4P31645 630 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 ATXN3P54252 364 aaPredicted RBP19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 BPIFB4P59827 614 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 MTA1Q13330 715 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 PDCLQ13371 301 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 N4BP2L1Q5TBK1 243 aaPredicted RBP19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 MBLAC2Q68D91 279 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC41A1Q8IVJ1 513 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 DEFB119Q8N690 84 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 OR2T3Q8NH03 318 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 ERLEC1Q96DZ1 483 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 HSPA12BQ96MM6 686 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 NUP58Q9BVL2 599 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 NUP62CLQ9H1M0 184 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 SUN2Q9UH99 717 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 CYTH4Q9UIA0 394 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 CHD8Q9HCK8 2581 aa19.79■□□□□ 0.76
CCDC28A-203ENST00000617445 EPG5Q9HCE0 2579 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 GOLGA6L7A0A1B0GV03 622 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms