RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	CHRNB1	P11230	501 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	HOXA6	P31267	233 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ETFB	P38117	255 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	GALK1	P51570	392 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ZXDB	P98169	803 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	MS4A13	Q5J8X5	152 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	CCDC122	Q5T0U0	273 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ZC3H14	Q6PJT7	736 aa	Known RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	H2AFV	Q71UI9	128 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	GPIHBP1	Q8IV16	184 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	TERB1	Q8NA31	727 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	RIN3	Q8TB24	985 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	UBE2Q2	Q8WVN8	375 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	CXorf51A	A0A1B0GTR3	108 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	NEDD8-MDP1	E9PL57	170 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	MSI1	O43347	362 aa	Known RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	KAT7	O95251	611 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	RNASE9	P60153	205 aa	Known RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ZC3H12A	Q5D1E8	599 aa	Known RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF783	Q6ZMS7	281 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	BNIPL	Q7Z465	357 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	C11orf74	Q86VG3	221 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	CENPI	Q92674	756 aa	Predicted RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	OSBPL2	Q9H1P3	480 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	SEMA4A	Q9H3S1	761 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	KIAA1549L	Q6ZVL6	1849 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	KMT2E	Q8IZD2	1858 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	KLKB1	P03952	638 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SULT2A1	Q06520	285 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	PIGH	Q14442	188 aa	Predicted RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	C5orf22	Q49AR2	442 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	PIK3R6	Q5UE93	754 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	FSTL4	Q6MZW2	842 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	KDM1B	Q8NB78	822 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	ANP32B	Q92688	251 aa	Known RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TBCB	Q99426	244 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	IP6K2	Q9UHH9	426 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	CCDC163	A0A0D9SF12	145 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947		A0A1B0GVM2	712 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TCAF2	A6NFQ2	919 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TULP3	O75386	442 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	CLDN11	O75508	207 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	LUC7L3	O95232	432 aa	Known RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	EIF4A3	P38919	411 aa	Known RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SCAP	Q12770	1279 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	NME3	Q13232	169 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	CCIN	Q13939	588 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	FYB2	Q5VWT5	728 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	RHOT2	Q8IXI1	618 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	AHI1	Q8N157	1196 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	CAMKK1	Q8N5S9	505 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SPATA6	Q9NWH7	488 aa	Predicted RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	STARD13	Q9Y3M8	1113 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	FAM86C2P	A6NEL3	165 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TECTA	O75443	2155 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	ALDH1A2	O94788	518 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TMEM253	P0C7T8	217 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SKIL	P12757	684 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SFSWAP	Q12872	951 aa	Known RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	BYSL	Q13895	437 aa	Known RBP	11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	SPA17	Q15506	151 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	EFHC2	Q5JST6	749 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	PPP1R15B	Q5SWA1	713 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TMEM25	Q86YD3	366 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	ZNF687	Q8N1G0	1237 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	FOXQ1	Q9C009	403 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	ADAMTS1	Q9UHI8	967 aa		11.08	□□□□□ -0.64
UBR4-208	ENST00000459947	TCRBV5S1A1T	A0A578	114 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	GRAP2	O75791	330 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	CYP1A2	P05177	515 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	ATP5B	P06576	529 aa	Known RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	FLT3	P36888	993 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	CDH4	P55283	916 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	LGI2	Q8N0V4	545 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	PRMT8	Q9NR22	394 aa	Predicted RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	TBC1D3B	A6NDS4	549 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	RRM1	P23921	792 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	PSMA2	P25787	234 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	GAB4	Q2WGN9	574 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	E4F1	Q66K89	784 aa	Predicted RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	FIBIN	Q8TAL6	211 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	DLGAP2	Q9P1A6	1054 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	ARHGAP20	Q9P2F6	1191 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	SLC8A2	Q9UPR5	921 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	NCOR1	O75376	2440 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	TBL1X	O60907	577 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	MOCS2	O96007	188 aa	Predicted RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	CNR2	P34972	360 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	CXCL12	P48061	93 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	VASP	P50552	380 aa	Predicted RBP	11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	MAMLD1	Q13495	774 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	CDH18	Q13634	790 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	TAF5	Q15542	800 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	WDR59	Q6PJI9	974 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	TPGS1	Q6ZTW0	290 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	TMEM105	Q8N8V8	129 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	WBP2	Q969T9	261 aa		11.07	□□□□□ -0.64
UBR4-208	ENST00000459947	MCEE	Q96PE7	176 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms