RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.74■□□□□ 0.59
VIM-201ENST00000224237 PAK5Q9P286 719 aa18.74■□□□□ 0.59
VIM-201ENST00000224237 NUDT5Q9UKK9 219 aa18.74■□□□□ 0.59
VIM-201ENST00000224237 TLR6Q9Y2C9 796 aa18.74■□□□□ 0.59
VIM-201ENST00000224237 MFHAS1Q9Y4C4 1052 aa18.74■□□□□ 0.59
VIM-201ENST00000224237 PCDHB12Q9Y5F1 795 aa18.74■□□□□ 0.59
VIM-201ENST00000224237 SLC38A8A6NNN8 435 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 H0YGN5 161 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 LRIG2O94898 1065 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 NUDT17P0C025 328 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 HTR7P34969 479 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 HTRA4P83105 476 aaPredicted RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 B4GALNT4Q76KP1 1039 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 GIPC2Q8TF65 315 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 TFB1MQ8WVM0 346 aaKnown RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 AUTS2Q8WXX7 1259 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 PKNOX2Q96KN3 472 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 EPB41L4BQ9H329 900 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 SEMA4AQ9H3S1 761 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 ZMYND8Q9ULU4 1186 aaPredicted RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 RAD54BQ9Y620 910 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 NFS1Q9Y697 457 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 SLC2A3P11169 496 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 DNAJB2P25686 324 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 EIF3BP55884 814 aaKnown RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 PDK1Q15118 436 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 HEATR6Q6AI08 1181 aaKnown RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 PSRC1Q6PGN9 363 aaPredicted RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 C4orf22Q6V702 233 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 RELL1Q8IUW5 271 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 GPR65Q8IYL9 337 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 VPS52Q8N1B4 723 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 CPT1BQ92523 772 aa18.73■□□□□ 0.59
VIM-201ENST00000224237 PRCCQ92733 491 aaPredicted RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 CDC42EP4Q9H3Q1 356 aaKnown RBP18.73■□□□□ 0.59
VIM-201ENST00000224237 GOLGA8KD6RF30 607 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 PPP1R12AO14974 1030 aaPredicted RBP18.72■□□□□ 0.59
VIM-201ENST00000224237 RIPK2O43353 540 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 RNF40O75150 1001 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 ZNF189O75820 626 aaPredicted RBP18.72■□□□□ 0.59
VIM-201ENST00000224237 ZDHHC11BP0C7U3 371 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 LINC00271P0C7V0 271 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 EPHB2P29323 1055 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 SERPINB6P35237 376 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 BASP1P80723 227 aaKnown RBP18.72■□□□□ 0.59
VIM-201ENST00000224237 DMTNQ08495 405 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 FIBCD1Q8N539 461 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 SLC39A13Q96H72 371 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 FERMT1Q9BQL6 677 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.72■□□□□ 0.59
VIM-201ENST00000224237 MRPL17Q9NRX2 175 aaKnown RBP18.72■□□□□ 0.59
VIM-201ENST00000224237 INSL6Q9Y581 213 aa18.72■□□□□ 0.59
VIM-201ENST00000224237 GOLGA6L10A6NI86 522 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 KCNU1A8MYU2 1149 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 NCAM2O15394 837 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 PAGE1O75459 146 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 NRLP54845 237 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 CREMQ03060 361 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 EFEMP1Q12805 493 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 RAB33AQ14088 237 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 CEP85LQ5SZL2 805 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 RASIP1Q5U651 963 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 NAT8LQ8N9F0 302 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 OVCA2Q8WZ82 227 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 RBM15Q96T37 977 aaKnown RBP eCLIP18.71■□□□□ 0.592e-11■■□□□ 14.4
VIM-201ENST00000224237 ZBED2Q9BTP6 218 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 UBE2OQ9C0C9 1292 aaKnown RBP18.71■□□□□ 0.59
VIM-201ENST00000224237 PHACTR1Q9C0D0 580 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 CYP4F11Q9HBI6 524 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 MAGED2Q9UNF1 606 aaPredicted RBP18.71■□□□□ 0.59
VIM-201ENST00000224237 SNX10Q9Y5X0 201 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 SEC24AO95486 1093 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 TBX4P57082 545 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 ZNF844Q08AG5 666 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 IFFO1Q0D2I5 559 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 SLC29A2Q14542 456 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 PDZD8Q8NEN9 1154 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 HTR3CQ8WXA8 447 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 CDK5RAP1Q96SZ6 601 aaKnown RBP18.71■□□□□ 0.59
VIM-201ENST00000224237 SIK2Q9H0K1 926 aa18.71■□□□□ 0.59
VIM-201ENST00000224237 C5orf60A6NFR6 353 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 GCATO75600 419 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 FGF18O76093 207 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 CSH1P0DML2 217 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 CSH2P0DML3 217 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 HOXC13P31276 330 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 NRG1Q02297 640 aaPredicted RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 PRKD1Q15139 912 aaPredicted RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 TRIP4Q15650 581 aaPredicted RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 C10orf120Q5SQS8 335 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 CCDC33Q8N5R6 958 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 OR2W6PQ8NHA6 318 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 CLP1Q92989 425 aaKnown RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 FCRL2Q96LA5 508 aaPredicted RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 KLC2Q9H0B6 622 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 DNAJC17Q9NVM6 304 aaKnown RBP18.7■□□□□ 0.58
VIM-201ENST00000224237 MARCH2Q9P0N8 246 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 FNIP2Q9P278 1114 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 SSX2IPQ9Y2D8 614 aa18.7■□□□□ 0.58
VIM-201ENST00000224237 LCHNA4D1U4 455 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms