RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 NACA2Q9H009 215 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 C8orf33Q9H7E9 229 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 METTL5Q9NRN9 209 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 MARK1Q9P0L2 795 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 FBXO10Q9UK96 956 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 SIT1Q9Y3P8 196 aa9.6□□□□□ -0.87
VPS35-206ENST00000565228 HBS1LQ9Y450 684 aaKnown RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 FARP1Q9Y4F1 1045 aaPredicted RBP9.6□□□□□ -0.87
VPS35-206ENST00000565228 SYNJ2BP-COX16A0A087WUM0 186 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 A0A087X0T9 212 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 C2CD4BA6NLJ0 364 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 PRRT4C9JH25 899 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 HSF2BPO75031 334 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 TULP3O75386 442 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 GLI1P08151 1106 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 FAM228BP0C875 321 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 ADH5P11766 374 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 HOXD9P28356 352 aaPredicted RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 HNRNPH3P31942 346 aaKnown RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 RFC1P35251 1148 aaPredicted RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 MATKP42679 507 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 ZNF75DP51815 510 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 GSCP56915 257 aaPredicted RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 TBX4P57082 545 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 COG7P83436 770 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 ZBED6P86452 979 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 SATB1Q01826 763 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 NHLH1Q02575 133 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 KDSRQ06136 332 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 FAM102AQ5T9C2 384 aaPredicted RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 DDX42Q86XP3 938 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS35-206ENST00000565228 CPA6Q8N4T0 437 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 DTWD2Q8NBA8 298 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 OR52K2Q8NGK3 314 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 RXFP2Q8WXD0 754 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 PLD4Q96BZ4 506 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 ARHGEF26Q96DR7 871 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 P2RY13Q9BPV8 354 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 PACSIN1Q9BY11 444 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 MFSD1Q9H3U5 465 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 OLA1Q9NTK5 396 aaKnown RBP9.59□□□□□ -0.87
VPS35-206ENST00000565228 COX16Q9P0S2 106 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 TBC1D14Q9P2M4 693 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 TLR6Q9Y2C9 796 aa9.59□□□□□ -0.87
VPS35-206ENST00000565228 DMXL1Q9Y485 3027 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 SPTBN4Q9H254 2564 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 A0A0A0MRY4 1105 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NEDD8-MDP1E9PL57 170 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 K7ESF4 209 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 STK25O00506 426 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CACNG3O60359 315 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ACSL4O60488 711 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 MFAP3LO75121 409 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ENDOD1O94919 500 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NFATC1O95644 943 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 TYRP14679 529 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 TNFAIP3P21580 790 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NOS2P35228 1153 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 SCNN1AP37088 669 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 KIR2DL1P43626 348 aaPredicted RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 CXCR3P49682 368 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NUMBP49757 651 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 HDAC4P56524 1084 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 RPS24P62847 133 aaKnown RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 TPM4P67936 248 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 KLHL30Q0D2K2 578 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 GEN1Q17RS7 908 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ANO4Q32M45 955 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 FSCBQ5H9T9 825 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 MS4A13Q5J8X5 152 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 EFHC1Q5JVL4 640 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 DAB2IPQ5VWQ8 1189 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 SPECC1LQ69YQ0 1117 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 TRIM72Q6ZMU5 477 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CYP4V2Q6ZWL3 525 aaPredicted RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 TMC6Q7Z403 805 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CIR1Q86X95 450 aaPredicted RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 CFAP52Q8N1V2 620 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CPXM2Q8N436 756 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 TC2NQ8N9U0 490 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 IPO4Q8TEX9 1081 aaKnown RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 CENPIQ92674 756 aaPredicted RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 CD101Q93033 1021 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 IGSF8Q969P0 613 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CDK5RAP1Q96SZ6 601 aaKnown RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 ACOX2Q99424 681 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 DNAJC7Q99615 494 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NUP58Q9BVL2 599 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 OSBPL6Q9BZF3 934 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ISCUQ9H1K1 167 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 PDCL3Q9H2J4 239 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CHRDQ9H2X0 955 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 CD248Q9HCU0 757 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 SEPT11Q9NVA2 429 aaKnown RBP9.58□□□□□ -0.88
VPS35-206ENST00000565228 DDIT4Q9NX09 232 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ARHGEF38Q9NXL2 777 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS35-206ENST00000565228 ADAM22Q9P0K1 906 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 ADAMTS1Q9UHI8 967 aa9.58□□□□□ -0.88
VPS35-206ENST00000565228 NEU3Q9UQ49 428 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms