RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 UBE3BQ7Z3V4 1068 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 RABEPKQ7Z6M1 372 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 ADGRA1Q86SQ6 560 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 ADCK1Q86TW2 530 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 CCDC105Q8IYK2 499 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 CNTROBQ8N137 903 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 DCBLD1Q8N8Z6 715 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 KIF18AQ8NI77 898 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 PIP4K2CQ8TBX8 421 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 CYFIP2Q96F07 1278 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 FER1L6-AS2Q96M78 137 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 ZNF830Q96NB3 372 aaPredicted RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 FAM210AQ96ND0 272 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 TXN2Q99757 166 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 LBHD1Q9BQE6 289 aaPredicted RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 SPATA25Q9BR10 227 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 KRTAP3-1Q9BYR8 98 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 IL21RQ9HBE5 538 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 VEZTQ9HBM0 779 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 ARHGEF3Q9NR81 526 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 SIRT3Q9NTG7 399 aaPredicted RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 ANO10Q9NW15 660 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 ZNHIT6Q9NWK9 470 aaKnown RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 ZDHHC7Q9NXF8 308 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 NINJ2Q9NZG7 142 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 AURKCQ9UQB9 309 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 MED16Q9Y2X0 877 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 CAB39Q9Y376 341 aaPredicted RBP6.64□□□□□ -1.35
VPS29-210ENST00000552130 HCFC2Q9Y5Z7 792 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 DUSP10Q9Y6W6 482 aa6.64□□□□□ -1.35
VPS29-210ENST00000552130 LINC00854A0A1B0GVQ3 168 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 ZNF263O14978 683 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 NOBOXO60393 691 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 NPHS1O60500 1241 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 NEMFO60524 1076 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 BCAS2O75934 225 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 PCDH8O95206 1070 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 GCNT3O95395 438 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 IFNB1P01574 187 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 AHSGP02765 367 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 TFRCP02786 760 aaKnown RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 ITGB3P05106 788 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 SPARCP09486 303 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 TMEM11P17152 192 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 PTAFRP25105 342 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 IL1R2P27930 398 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 MCM7P33993 719 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 GJA4P35212 333 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 BSGP35613 385 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 PIP4K2AP48426 406 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 LUMP51884 338 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 RBM5P52756 815 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS29-210ENST00000552130 POLGP54098 1239 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 CCNA1P78396 465 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 GBE1Q04446 702 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 PTP4A2Q12974 167 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 RPS6KA2Q15349 733 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 NTRK2Q16620 822 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 BTBD16Q32M84 506 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 EEF1AKMT2Q5JPI9 291 aaKnown RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 C9orf152Q5JTZ5 239 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 HLA-DQA1Q5Y7H0 255 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 DRICH1Q6PGQ1 229 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 RSPH3Q86UC2 560 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 KRT73Q86Y46 540 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 DNAAF5Q86Y56 855 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 LINC00346Q8IVM7 164 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 SETD6Q8TBK2 473 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 SLC22A18Q96BI1 424 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 GCNAQ96QF7 691 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 MRPL46Q9H2W6 279 aaKnown RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 EPB41L1Q9H4G0 881 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 DNAJC18Q9H819 358 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 BTG4Q9NY30 223 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 IL19Q9UHD0 177 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 KCND3Q9UK17 655 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 PTBP2Q9UKA9 531 aaKnown RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 AJAP1Q9UKB5 411 aaPredicted RBP6.63□□□□□ -1.35
VPS29-210ENST00000552130 CA14Q9ULX7 337 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 USP18Q9UMW8 372 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 LIPT1Q9Y234 373 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 KDM3AQ9Y4C1 1321 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 FPGT-TNNI3KV9GXZ4 949 aa6.63□□□□□ -1.35
VPS29-210ENST00000552130 ATP8B3O60423 1300 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 IGSF1Q8N6C5 1336 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 hCG_1809904A0A1W2PP81 198 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PPE2 198 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PQ27 194 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PQ64 194 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PQC6 194 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PQD8 194 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PR64 198 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 A0A1W2PRV1 198 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 LRRD1A4D1F6 860 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 MBD3L4A6NDZ8 208 aaPredicted RBP6.62□□□□□ -1.35
VPS29-210ENST00000552130 MBD3L3A6NE82 208 aaPredicted RBP6.62□□□□□ -1.35
VPS29-210ENST00000552130 LIPT2A6NK58 231 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 C1QTNF3-AMACRE9PGA6 284 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 MATN3O15232 486 aa6.62□□□□□ -1.35
VPS29-210ENST00000552130 PEX11AO75192 247 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms