RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	NRDC	O43847	1150 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	GREM1	O60565	184 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	ENDOD1	O94919	500 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	LRRC31	Q6UY01	552 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	DTWD2	Q8NBA8	298 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	CPLX3	Q8WVH0	158 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	TMA16	Q96EY4	203 aa	Known RBP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	CNPY3	Q9BT09	278 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	METTL5	Q9NRN9	209 aa	Known RBP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	SFMBT1	Q9UHJ3	866 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	INTU	Q9ULD6	942 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947		A0A0A0MRY4	1105 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947		M0QYT0	321 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	PIK3R2	O00459	728 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	IPO7	O95373	1038 aa	Known RBP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	MOCS3	O95396	460 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	FYN	P06241	537 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	HMBS	P08397	361 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	CXCR3	P49682	368 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	ANO4	Q32M45	955 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	SPEM1	Q8N4L4	309 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	TTC16	Q8NEE8	873 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	NTAN1	Q96AB6	310 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	ZFYVE19	Q96K21	471 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	GTSE1	Q9NYZ3	720 aa		11.11	□□□□□ -0.63
UBR4-208	ENST00000459947	ZBTB24	O43167	697 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	GALR2	O43603	387 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PTPN5	P54829	565 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	NRL	P54845	237 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	NRG1	Q02297	640 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PTP4A2	Q12974	167 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	TBX2	Q13207	712 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PLEKHA7	Q6IQ23	1121 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	RHBDF2	Q6PJF5	856 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CHSY1	Q86X52	802 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC30A5	Q8TAD4	765 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF653	Q96CK0	615 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	HAPLN3	Q96S86	360 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ARHGEF4	Q9NR80	690 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ABHD10	Q9NUJ1	306 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	NUDT5	Q9UKK9	219 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	AKR1B10	O60218	316 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ASL	P04424	464 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PDGFRA	P16234	1089 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	TARS	P26639	723 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CYLC1	P35663	651 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PGF	P49763	221 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CHST9	Q7L1S5	443 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CCDC170	Q8IYT3	715 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	NDRG1	Q92597	394 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	C1orf74	Q96LT6	269 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CCDC42	Q96M95	316 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PANX2	Q96RD6	677 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	LINC00597	Q9H2U6	94 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	LMAN1L	Q9HAT1	526 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ARHGEF38	Q9NXL2	777 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	KCNU1	A8MYU2	1149 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	DGKG	P49619	791 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF528	Q3MIS6	628 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	EOGT	Q5NDL2	527 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	HGSNAT	Q68CP4	663 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	TRIM68	Q6AZZ1	485 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PSTK	Q8IV42	348 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ETFBKMT	Q8IXQ9	262 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	WDCP	Q9H6R7	721 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	UVRAG	Q9P2Y5	699 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	NDRG2	Q9UN36	371 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	C2CD4B	A6NLJ0	364 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	GFRA2	O00451	464 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	DDX3X	O00571	662 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	FTL	P02792	175 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ZNF143	P52747	638 aa	Predicted RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	GSDMD	P57764	484 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	PON2	Q15165	354 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	SLC18A3	Q16572	532 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	SDE2	Q6IQ49	451 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	ANKS1B	Q7Z6G8	1248 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	DDI1	Q8WTU0	396 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	DNAJC17	Q9NVM6	304 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	CNOT8	Q9UFF9	292 aa	Known RBP	11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	FBXO10	Q9UK96	956 aa		11.1	□□□□□ -0.63
UBR4-208	ENST00000459947	LAMTOR5	O43504	91 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	RNF8	O76064	485 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	TYR	P14679	529 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	TACR2	P21452	398 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	OPRD1	P41143	372 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	TNK2	Q07912	1038 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	SYPL2	Q5VXT5	272 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	RNF43	Q68DV7	783 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	ALKBH5	Q6P6C2	394 aa	Known RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	TMTC1	Q8IUR5	882 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	RXFP2	Q8WXD0	754 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	FBRS	Q9HAH7	460 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	C11orf16	Q9NQ32	467 aa		11.09	□□□□□ -0.63
UBR4-208	ENST00000459947	H2AFZ	P0C0S5	128 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms