RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SNHG28P0DPA3 235 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 PCSK7Q16549 785 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 FBXW8Q8N3Y1 598 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 RMDN1Q96DB5 314 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 L3MBTL3Q96JM7 780 aaPredicted RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 PLGRKTQ9HBL7 147 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 NDUFS3O75489 264 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 ACAT1P24752 427 aaKnown RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 FOXN2P32314 431 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 TCF7P36402 384 aaPredicted RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 FASTKQ14296 549 aaKnown RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 ANGEL2Q5VTE6 544 aaKnown RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 ADGRD1Q6QNK2 874 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 KCNT2Q6UVM3 1135 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 C7orf26Q96N11 449 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 C9orf16Q9BUW7 83 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 ANKRD6Q9Y2G4 727 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 RGSL1A5PLK6 1076 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 ASB14A6NK59 587 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 NR5A2O00482 541 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 CCNB1P14635 433 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 PTPN7P35236 360 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 NFYCQ13952 458 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 ISLR2Q6UXK2 745 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 CHST13Q8NET6 341 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 SLC44A1Q8WWI5 657 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 SLC25A23Q9BV35 468 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 IKZF4Q9H2S9 585 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 EFR3BQ9Y2G0 817 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 AKAP12Q02952 1782 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 HACD1B0YJ81 288 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 NCAM2O15394 837 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 BCAT1P54687 386 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 P3H2Q8IVL5 708 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 NKD2Q969F2 451 aaPredicted RBP19.8■□□□□ 0.76
USP48-201ENST00000308271 C17orf80Q9BSJ5 609 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 DMTF1Q9Y222 760 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 AP4B1Q9Y6B7 739 aa19.8■□□□□ 0.76
USP48-201ENST00000308271 C15orf38-AP3S2A0A0A6YYH1 394 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 C1orf232A0A0U1RR37 186 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 TMC7Q7Z402 723 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 ARPINQ7Z6K5 226 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 ZNF333Q96JL9 665 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 IDI2Q9BXS1 227 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 PIGNO95427 931 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 HMGCRP04035 888 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 NRF1Q16656 503 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 SLC22A9Q8IVM8 553 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 PQLC1Q8N2U9 271 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 MMP19Q99542 508 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 APOL2Q9BQE5 337 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 BARX2Q9UMQ3 279 aaPredicted RBP19.79■□□□□ 0.76
USP48-201ENST00000308271 ASTN2O75129 1339 aaPredicted RBP19.79■□□□□ 0.76
USP48-201ENST00000308271 PEX11AO75192 247 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 PMPCBO75439 489 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 GABRB2P47870 512 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 MMRN1Q13201 1228 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 KRR1Q13601 381 aaKnown RBP19.79■□□□□ 0.76
USP48-201ENST00000308271 SV2CQ496J9 727 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 DHRSXQ8N5I4 330 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 ZSCAN18Q8TBC5 510 aaPredicted RBP19.79■□□□□ 0.76
USP48-201ENST00000308271 OSCP1Q8WVF1 389 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 PSMD13Q9UNM6 376 aa19.79■□□□□ 0.76
USP48-201ENST00000308271 M0R2N6 131 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 BPGMP07738 259 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 LNPEPQ9UIQ6 1025 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 PLLPQ9Y342 182 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 NCAM1P13591 858 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 RPS6KA3P51812 740 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 TAS2R42Q7RTR8 314 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 KCNMB4Q86W47 210 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 CAMK1DQ8IU85 385 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 ABI1Q8IZP0 508 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 RP9Q8TA86 221 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 PABPC5Q96DU9 382 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 MBOAT7Q96N66 472 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 RSL24D1Q9UHA3 163 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 TSPAN16Q9UKR8 245 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 ITGA11Q9UKX5 1188 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 TMEM191CA6NGB0 347 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 PNPLA4P41247 253 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 WDR4P57081 412 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 FUT11Q495W5 492 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 APOBEC3HQ6NTF7 200 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 CYP2R1Q6VVX0 501 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 ZDHHC17Q8IUH5 632 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 APOBEC3FQ8IUX4 373 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 SEMA4DQ92854 862 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 SLCO2A1Q92959 643 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 EBNA1BP2Q99848 306 aaKnown RBP19.78■□□□□ 0.76
USP48-201ENST00000308271 BDH2Q9BUT1 245 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 MECRQ9BV79 373 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 EPS8L2Q9H6S3 715 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 TRPC7Q9HCX4 862 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 DDIT4Q9NX09 232 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 ERAP1Q9NZ08 941 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 SOAT2O75908 522 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 MICAL2O94851 1124 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 CCDC159P0C7I6 412 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms