RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 HAUS3Q68CZ6 603 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 NAIF1Q69YI7 327 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-211ENST00000484581 PDXDC1Q6P996 788 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 FOXR2Q6PJQ5 311 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 PCSK4Q6UW60 755 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-211ENST00000484581 TMTC3Q6ZXV5 915 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 HTR3DQ70Z44 454 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 MRGPREQ86SM8 312 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 ABRAQ8N0Z2 381 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 ZNF276Q8N554 614 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 Q8NA96 180 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SLC2A12Q8TD20 617 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 MNTQ99583 582 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SDF4Q9BRK5 362 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 VN1R3Q9BXE9 311 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 LMAN2LQ9H0V9 348 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SERHL2Q9H4I8 314 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 TRIM36Q9NQ86 728 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 RNF181Q9P0P0 153 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 BAG5Q9UL15 447 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 HSF4Q9ULV5 492 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SSX2IPQ9Y2D8 614 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 ZBTB1Q9Y2K1 713 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SLC27A6Q9Y2P4 619 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 SNX14Q9Y5W7 946 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 AATKQ6ZMQ8 1374 aa5.03□□□□□ -1.6
VPS13A-211ENST00000484581 LMTK3Q96Q04 1460 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 LOC105369274A0A096LPK9 316 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 LOC102723532A0A0G2JNH3 316 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CCDC78A2IDD5 438 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CCER2I3L3R5 266 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 LEFTY2O00292 366 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 SPTLC2O15270 562 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 KLK10O43240 276 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CTIFO43310 598 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ORC4O43929 436 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ERN1O75460 977 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 WDR47O94967 919 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 GPANK1O95872 356 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 LMNAP02545 664 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 MYCLP12524 364 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 RRM1P23921 792 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 PGM1P36871 562 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 GSTM5P46439 218 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 NPTX2P47972 431 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 POLD2P49005 469 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 RABGGTBP53611 331 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 TIRAPP58753 221 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 HSD11B2P80365 405 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 OCA2Q04671 838 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 HNRNPA0Q13151 305 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 DYRK1AQ13627 763 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 PTPAQ15257 358 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CCDC96Q2M329 555 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 FAM133BQ5BKY9 247 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 TMEM196Q5HYL7 178 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ZNF484Q5JVG2 852 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 RBM20Q5T481 1227 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 C1QL3Q5VWW1 255 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CLEC9AQ6UXN8 241 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 PIK3AP1Q6ZUJ8 805 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 MICALCLQ6ZW33 695 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 B4GALNT4Q76KP1 1039 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 KRT77Q7Z794 578 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CHD1LQ86WJ1 897 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ADGRG5Q8IZF4 528 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 FAM9BQ8IZU0 186 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 OR4N4Q8N0Y3 316 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 SLC22A17Q8WUG5 538 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 OSCP1Q8WVF1 389 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 REXO5Q96IC2 774 aaKnown RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ZBTB45Q96K62 511 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-211ENST00000484581 ZSWIM1Q9BR11 485 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 FUZQ9BT04 418 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 MECRQ9BV79 373 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CCDC68Q9H2F9 335 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 CCDC134Q9H6E4 229 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 KCNK9Q9NPC2 374 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 STEAP1Q9UHE8 339 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 KCNE5Q9UJ90 142 aa5.02□□□□□ -1.61
VPS13A-211ENST00000484581 MBD3L5A6NJ08 208 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 HNRNPRO43390 633 aaKnown RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 TRIAP1O43715 76 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 F9P00740 461 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 ARF3P61204 181 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 RPS7P62081 194 aaKnown RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 ARF1P84077 181 aaKnown RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 DCTN1Q14203 1278 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 P3H1Q32P28 736 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 ZNF569Q5MCW4 686 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 LY6G5CQ5SRR4 150 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 LIPMQ5VYY2 423 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 R3HCC1LQ7Z5L2 792 aaKnown RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 GALNT5Q7Z7M9 940 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 GALNT4Q8N4A0 578 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 LSMEM1Q8N8F7 131 aa5.01□□□□□ -1.61
VPS13A-211ENST00000484581 PTGR2Q8N8N7 351 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-211ENST00000484581 FAM71DQ8N9W8 422 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms