RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CRTAC1Q9NQ79 661 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 TMLHEQ9NVH6 421 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 KLHL14Q9P2G3 628 aa9.03□□□□□ -0.96
LIMCH1-209ENST00000509277 BRWD1Q9NSI6 2320 aa9.02□□□□□ -0.96
LIMCH1-209ENST00000509277 EYSQ5T1H1 3165 aa9.02□□□□□ -0.96
LIMCH1-209ENST00000509277 H0YGN5 161 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PARNO95453 639 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 CXCL10P02778 98 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 HMBSP08397 361 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 GPC5P78333 572 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 NME3Q13232 169 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 CLEC16AQ2KHT3 1053 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 GLE1Q53GS7 698 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 KIAA0319Q5VV43 1072 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PMF1Q6P1K2 205 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 LRRTM3Q86VH5 581 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 TTC30AQ86WT1 665 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 NMD3Q96D46 503 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 BCO2Q9BYV7 579 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ZWILCHQ9H900 591 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 GALNT8Q9NY28 637 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 DCTN4Q9UJW0 460 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 O00370 1275 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ADAM12O43184 909 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 DNAJC6O75061 913 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SUN1O94901 812 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 GJB5O95377 273 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 USP17L7P0C7H9 530 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 LRPAP1P30533 357 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 CCNFP41002 786 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ABL2P42684 1182 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 LHX1P48742 406 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 RPL7AP62424 266 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SETDB1Q15047 1291 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SEPT7Q16181 437 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PSMD5Q16401 504 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SMTNL2Q2TAL5 461 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PTPN20Q4JDL3 420 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM182AQ5T1J6 154 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ACAD10Q6JQN1 1059 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ZNF280DQ6N043 979 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PSRC1Q6PGN9 363 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 UTS2BQ765I0 119 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 LCA5Q86VQ0 697 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 HERC6Q8IVU3 1022 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 IQCKQ8N0W5 287 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SCAMP5Q8TAC9 235 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 CXorf38Q8TB03 319 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 EPS8L3Q8TE67 593 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 SYN2Q92777 582 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 ERP27Q96DN0 273 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 PIWIL1Q96J94 861 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 TTPALQ9BTX7 342 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 TLR10Q9BXR5 811 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 MMADHCQ9H3L0 296 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 RPS6KL1Q9Y6S9 549 aa9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 TDRD15B5MCY1 1934 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-209ENST00000509277 HNRNPRO43390 633 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 LPXNO60711 386 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 RTN3O95197 1032 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CYP3A5P20815 502 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CACNA2D1P54289 1103 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM189BP81408 668 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 LONRF1Q17RB8 773 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 ACBD5Q5T8D3 534 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 KAZNQ674X7 775 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 PIGZQ86VD9 579 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TTC8Q8TAM2 541 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 STMN2Q93045 179 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TTC1Q99614 292 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 NEUROG2Q9H2A3 272 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TMBIM4Q9HC24 238 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 SPG21Q9NZD8 308 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CXCL14O95715 111 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FUT4P22083 530 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 SP100P23497 879 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 PRKCIP41743 596 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CPA2P48052 419 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TKTL1P51854 596 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 NOMO3P69849 1222 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CHRDL2Q6WN34 429 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM35AQ86V20 835 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FMO2Q99518 471 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 PREBQ9HCU5 417 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 NKX1-2Q9UD57 310 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CYTH4Q9UIA0 394 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 INSL6Q9Y581 213 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 PI4K2BG5E9Z4 385 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FGF18O76093 207 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FGGP02679 453 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 ERBB2P04626 1255 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 KRT3P12035 628 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 PSMA2P25787 234 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 ANXA13P27216 316 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MTMR3Q13615 1198 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 USP41Q3LFD5 358 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TBC1D25Q3MII6 688 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 KCNT1Q5JUK3 1230 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CWF19L1Q69YN2 538 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms