RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 CNTNAP1P78357 1384 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 LACTBL1A8MY62 500 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC26A4O43511 780 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 VPS26AO75436 327 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 RB1P06400 928 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 COX7A2P14406 83 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 PRSS55Q6UWB4 352 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 BAP1Q92560 729 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MCEEQ96PE7 176 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CDCA3Q99618 268 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 SMARCAL1Q9NZC9 954 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MAD2L2Q9UI95 211 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 DDX41Q9UJV9 622 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 B4DGG1 531 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 SLC35G4P0C7Q5 338 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 OR56A5P0C7T3 313 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ELFN1P0C7U0 828 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MLNP12872 115 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ATP6V1C1P21283 382 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 TUBP50607 506 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CCR4P51679 360 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 NDUFA8P51970 172 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 PER3P56645 1201 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 FOXC1Q12948 553 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 AGMOQ6ZNB7 445 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CENPUQ71F23 418 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ZNF564Q8TBZ8 553 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 BPIFB1Q8TDL5 484 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 COL26A1Q96A83 441 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 TMEM8AQ9HCN3 771 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 VTI1BQ9UEU0 232 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CDH9Q9ULB4 789 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 COL1A2P08123 1366 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MED1Q15648 1581 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 PRNPP04156 253 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 HOXB8P17481 243 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CXCL12P48061 93 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 SESN2P58004 480 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 KRT72Q14CN4 511 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 TRIM65Q6PJ69 517 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ANKS1BQ7Z6G8 1248 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MYO1HQ8N1T3 1032 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 KRT35Q92764 455 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CCDC124Q96CT7 223 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 BBS4Q96RK4 519 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 OSBPL9Q96SU4 736 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 PLK2Q9NYY3 685 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 MKL2Q9ULH7 1088 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 POLR1DQ9Y2S0 133 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 FAM170BA6NMN3 283 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 PEX10O60683 326 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CYP4F8P98187 520 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 OCA2Q04671 838 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ADIGQ0VDE8 80 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 LUZP2Q86TE4 346 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 WDR49Q8IV35 697 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ST13P5Q8NFI4 369 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 CPA5Q8WXQ8 436 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 LENG9Q96B70 501 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ASB7Q9H672 318 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 ATP13A3Q9H7F0 1226 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 VCX3AQ9NNX9 186 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 DNPEPQ9ULA0 475 aa9.5□□□□□ -0.89
LIMCH1-202ENST00000381753 URADA6NGE7 173 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CASKO14936 926 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 RPA1P27694 616 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 INPP1P49441 399 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SESN3P58005 492 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 ZNF445P59923 1031 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 ATCAYQ86WG3 371 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 GALNT13Q8IUC8 556 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 STAMBPL1Q96FJ0 436 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 RWDD2AQ9UIY3 292 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SMIM22K7EJ46 135 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 BLVRAP53004 296 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CNTN1Q12860 1018 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 CRY2Q49AN0 593 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SLFN11Q7Z7L1 901 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 GKN2Q86XP6 184 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 MB21D2Q8IYB1 491 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 KLHL23Q8NBE8 558 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 ATXN7L3BQ96GX2 97 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 LRRC37BQ96QE4 947 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PURBQ96QR8 312 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 EPB41L5Q9HCM4 733 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 KIAA1468Q9P260 1216 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PNMA8BQ9ULN7 279 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 SIT1Q9Y3P8 196 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PCDHA11Q9Y5I1 949 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PDXKO00764 312 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 OR10H2O60403 315 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 HSPA4LO95757 839 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 STMN1P16949 149 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 POMGNT2Q8NAT1 580 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 MYLPFQ96A32 169 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 MAGED4Q96JG8 741 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 PRPF18Q99633 342 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 RGS18Q9NS28 235 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 A0A1W2PRU2 124 aa9.49□□□□□ -0.89
LIMCH1-202ENST00000381753 EFCAB8A8MWE9 144 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms