RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ZSWIM2Q8NEG5 633 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 MRPS26Q9BYN8 205 aaKnown RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 UBE2OQ9C0C9 1292 aaKnown RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 RUBCNLQ9H714 662 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 IARS2Q9NSE4 1012 aaKnown RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 C6orf203Q9P0P8 240 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 SPEF2Q9C093 1822 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 XRN1Q8IZH2 1706 aaKnown RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 GAKO14976 1311 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 NFIBO00712 420 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 MOCS2O96007 188 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 UQCRBP14927 111 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 FASP25445 335 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 TPP2P29144 1249 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 TAS2R40P59535 323 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 DGKDQ16760 1214 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 LIN52Q52LA3 116 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 RFWD2Q8NHY2 731 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 SAE1Q9UBE0 346 aaPredicted RBP19.86■□□□□ 0.77
USP48-201ENST00000308271 CHKBQ9Y259 395 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 DDHD2O94830 711 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 VAV1P15498 845 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 EMC10Q5UCC4 262 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 POLNQ7Z5Q5 900 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 TDRPQ86YL5 185 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 RNF148Q8N7C7 305 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 SLC17A7Q9P2U7 560 aa19.86■□□□□ 0.77
USP48-201ENST00000308271 A0A096LPK6 155 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TNPO2O14787 897 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 MAP3K10Q02779 954 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TBCELQ5QJ74 424 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 ALYREFQ86V81 257 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 SHCBP1Q8NEM2 672 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 SLC7A14Q8TBB6 771 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 SPOCK2Q92563 424 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 LENG1Q96BZ8 264 aaPredicted RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 CPNE1Q99829 537 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 DCUN1D5Q9BTE7 237 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 LYNP07948 512 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 SOX11P35716 441 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 SOX10P56693 466 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 NOMO3P69849 1222 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TSPY1Q01534 308 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 CYP1B1Q16678 543 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 BTBD8Q5XKL5 378 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 MICU2Q8IYU8 434 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 GALNT15Q8N3T1 639 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 ACMSDQ8TDX5 336 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 PDCD6IPQ8WUM4 868 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 ATG4CQ96DT6 458 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 EGFL8Q99944 293 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 SSU72Q9NP77 194 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 GGA3Q9NZ52 723 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 R3HDM2Q9Y2K5 976 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 TM7SF2O76062 418 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 ANGPTL8Q6UXH0 198 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 PALB2Q86YC2 1186 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TMCO1Q9UM00 188 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 MAGEB16A2A368 324 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 WDR27A2RRH5 827 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 CD4P01730 458 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 RARBP10826 455 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 CREB1P16220 341 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 NFKBIAP25963 317 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TTKP33981 857 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 TSTA3Q13630 321 aaPredicted RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 SLC5A9Q2M3M2 681 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 KHDC1Q4VXA5 237 aaKnown RBP19.85■□□□□ 0.77
USP48-201ENST00000308271 C16orf46Q6P387 395 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 NMUR2Q9GZQ4 415 aa19.85■□□□□ 0.77
USP48-201ENST00000308271 C19orf81C9J6K1 198 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 H0YGN5 161 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 MTA2O94776 668 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 BCL10O95999 233 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 GYS1P13807 737 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 NR2C2P49116 596 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 GLRA4Q5JXX5 417 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 TUBGCP3Q96CW5 907 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 CROTQ9UKG9 612 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 NFS1Q9Y697 457 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 SIGLEC1Q9BZZ2 1709 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 SIGLEC16A6NMB1 481 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 BANF1O75531 89 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 TXNP10599 105 aaKnown RBP19.84■□□□□ 0.77
USP48-201ENST00000308271 RBL1P28749 1068 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 AVPR1AP37288 418 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 CAP2P40123 477 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 DHFR2Q86XF0 187 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 CCDC60Q8IWA6 550 aaPredicted RBP19.84■□□□□ 0.77
USP48-201ENST00000308271 SLC4A9Q96Q91 983 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 SAC3D1A6NKF1 404 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 VSTM1Q6UX27 236 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 RBM44Q6ZP01 1051 aaKnown RBP19.84■□□□□ 0.77
USP48-201ENST00000308271 KREMEN1Q96MU8 473 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 V9GYQ6 96 aa19.84■□□□□ 0.77
USP48-201ENST00000308271 RBP1P09455 135 aa19.83■□□□□ 0.77
USP48-201ENST00000308271 ETS2P15036 469 aa19.83■□□□□ 0.77
USP48-201ENST00000308271 ATICP31939 592 aa19.83■□□□□ 0.77
USP48-201ENST00000308271 C21orf59P57076 290 aa19.83■□□□□ 0.77
USP48-201ENST00000308271 BRSK2Q8IWQ3 736 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms