RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 ACTRT2Q8TDY3 377 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 TFAP2BQ92481 460 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 MS4A7Q9GZW8 240 aaPredicted RBP4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 NUP62CLQ9H1M0 184 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 PRKRIP1Q9H875 184 aaPredicted RBP4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 SYNPO2LQ9H987 977 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 ZNF287Q9HBT7 754 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 ALG13Q9NP73 1137 aaKnown RBP4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 A1CFQ9NQ94 594 aaKnown RBP4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 KLC4Q9NSK0 619 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 FOXJ2Q9P0K8 574 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 SRP68Q9UHB9 627 aaKnown RBP4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 OGDHLQ9ULD0 1010 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 SSX2IPQ9Y2D8 614 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 PCDHGB6Q9Y5F9 930 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 USP16Q9Y5T5 823 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 KAT6AQ92794 2004 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 ADGRA2Q96PE1 1338 aa4.37□□□□□ -1.71
CKS1BP3-201ENST00000600888 TRIM43BA6NCK2 446 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 ADM5C9JUS6 153 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 hCG_1984214I3L0E3 225 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 PPM1DO15297 605 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 KCNQ3O43525 872 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 LMNAP02545 664 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 A1BGP04217 495 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SERPINB2P05120 415 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 RHOP08100 348 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 PPIFP30405 207 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 LRPAP1P30533 357 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 EIF4A1P60842 406 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SIM1P81133 766 aaPredicted RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SATB1Q01826 763 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 LMOD3Q0VAK6 560 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 DCTN1Q14203 1278 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 E2F2Q14209 437 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 HLTFQ14527 1009 aaKnown RBP eCLIP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 ERCC6LQ2NKX8 1250 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 PRR16Q569H4 304 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 ARHGAP40Q5TG30 622 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 DCAF12L1Q5VU92 463 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 DTX2Q86UW9 622 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SESTD1Q86VW0 696 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 OR56A3Q8NH54 315 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 FKBP10Q96AY3 582 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 TRIM43Q96BQ3 446 aaPredicted RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 CCDC136Q96JN2 1154 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SARGQ9BW04 601 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SERHLQ9NQF3 203 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 ZSCAN32Q9NX65 697 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 COL20A1Q9P218 1284 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 AFF4Q9UHB7 1163 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 NDRG4Q9ULP0 352 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 MRPS17Q9Y2R5 130 aaKnown RBP4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 PAXBP1Q9Y5B6 917 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 SLX4Q8IY92 1834 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 MAPK8IP3Q9UPT6 1336 aa4.36□□□□□ -1.71
CKS1BP3-201ENST00000600888 TNRC6CQ9HCJ0 1690 aaKnown RBP4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 LAMB2P55268 1798 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 A0A0G2JLW4 131 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 CCDC151A5D8V7 595 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 PYCARD-AS1I3L0S3 204 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 CAMTA2O94983 1202 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 PDHA1P08559 390 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 DPEP1P16444 411 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 RPL17P18621 184 aaKnown RBP4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 GNALP38405 381 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 TMPOP42166 694 aaKnown RBP4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 GRIA3P42263 894 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 DGKEP52429 567 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 MAPK10P53779 464 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 RIPK4P57078 832 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 MYO1EQ12965 1108 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 TBCCQ15814 346 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 ZIK1Q3SY52 487 aaPredicted RBP4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 MGAT5BQ3V5L5 792 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 PLA1AQ53H76 456 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 COBLL1Q53SF7 1204 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 TBC1D9BQ66K14 1250 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 RGS7BPQ6MZT1 257 aaPredicted RBP4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 KRT78Q8N1N4 520 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 SIMC1Q8NDZ2 872 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 CAGE1Q8TC20 777 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 PHKBQ93100 1093 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 RFKQ969G6 155 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 ALG8Q9BVK2 526 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 APOL5Q9BWW9 433 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 EHD3Q9NZN3 535 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 DKK3Q9UBP4 350 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 SERTAD3Q9UJW9 196 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 CARMIL3Q8ND23 1372 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 TIAM2Q8IVF5 1701 aa4.35□□□□□ -1.71
CKS1BP3-201ENST00000600888 ERVV-1B6SEH8 477 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 CHL1O00533 1208 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 KIAA0355O15063 1070 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 PQBP1O60828 265 aaKnown RBP4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 ELFN1P0C7U0 828 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 TRIM27P14373 513 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 RPS16P62249 146 aaKnown RBP4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 SP2Q02086 613 aa4.34□□□□□ -1.71
CKS1BP3-201ENST00000600888 KRT17Q04695 432 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms