RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ZCCHC9Q8N567 271 aaKnown RBP17.53■□□□□ 0.4
LDLR-206ENST00000557958 OR2W6PQ8NHA6 318 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 RSPH1Q8WYR4 309 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 SUSD3Q96L08 255 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 STMN4Q9H169 189 aaPredicted RBP17.53■□□□□ 0.4
LDLR-206ENST00000557958 SEMA4AQ9H3S1 761 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 POPDC2Q9HBU9 364 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 PCDH18Q9HCL0 1135 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 SHOC2Q9UQ13 582 aa17.53■□□□□ 0.4
LDLR-206ENST00000557958 MYBPHLA2RUH7 354 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 ADCY1Q08828 1119 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 SLC29A2Q14542 456 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 NOMO1Q15155 1222 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 ANKRD20A8PQ5CZ79 823 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 RELL1Q8IUW5 271 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 C7orf61Q8IZ16 206 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 DEFB106AQ8N104 65 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 TRIM62Q9BVG3 475 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 RRN3Q9NYV6 651 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 DNAJB4Q9UDY4 337 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 AP4E1Q9UPM8 1137 aa17.52■□□□□ 0.4
LDLR-206ENST00000557958 PRG3Q9Y2Y8 225 aaPredicted RBP17.52■□□□□ 0.4
LDLR-206ENST00000557958 CFAP69A5D8W1 941 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 TP73O15350 636 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 B4GALT3O60512 393 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 BEST1O76090 585 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 RBP3P10745 1247 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 ACTN2P35609 894 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 BCAR1P56945 870 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 MMRN1Q13201 1228 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 DCAF6Q58WW2 860 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 KCTD16Q68DU8 428 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 OTOP2Q7RTS6 562 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 CASD1Q96PB1 797 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 TMEM109Q9BVC6 243 aa17.52■□□□□ 0.39
LDLR-206ENST00000557958 RCOR3Q9P2K3 495 aaPredicted RBP17.52■□□□□ 0.39
LDLR-206ENST00000557958 SAE1Q9UBE0 346 aaPredicted RBP17.52■□□□□ 0.39
LDLR-206ENST00000557958 TDRD15B5MCY1 1934 aaKnown RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 CAPN9O14815 690 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 TRAPPC3O43617 180 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 ITGB1P05556 798 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 SYN1P17600 705 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 NR1D1P20393 614 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 CCDC142Q17RM4 750 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 RAB6CQ53S08 254 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 ZC3H12AQ5D1E8 599 aaKnown RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 PPP6R3Q5H9R7 873 aaPredicted RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 RAB41Q5JT25 222 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 SLC9A4Q6AI14 798 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 FAM171BQ6P995 826 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 DARS2Q6PI48 645 aaKnown RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 NPAS4Q8IUM7 802 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 MYLPFQ96A32 169 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 FAF2Q96CS3 445 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 VWCEQ96DN2 955 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 SLC2A13Q96QE2 648 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 SMOQ99835 787 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 ROPN1BQ9BZX4 212 aaPredicted RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 RAB6CQ9H0N0 254 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 EPB41L4BQ9H329 900 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 CDC42EP4Q9H3Q1 356 aaKnown RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 DHX35Q9H5Z1 703 aaKnown RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 ROPN1Q9HAT0 212 aaPredicted RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 CSNK1G1Q9HCP0 422 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 PNPLA8Q9NP80 782 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 DMAP1Q9NPF5 467 aaPredicted RBP17.51■□□□□ 0.39
LDLR-206ENST00000557958 HCSTQ9UBK5 93 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 PCDHB8Q9UN66 801 aa17.51■□□□□ 0.39
LDLR-206ENST00000557958 TMEM189-UBE2V1I3L0A0 370 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 HOXA2O43364 376 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 TTC4O95801 387 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 ARL4AP40617 200 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 AIF1P55008 147 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 HNRNPH2P55795 449 aaKnown RBP17.5■□□□□ 0.39
LDLR-206ENST00000557958 C6orf118Q5T5N4 469 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 KDM7AQ6ZMT4 941 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 C4orf50Q6ZRC1 276 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 UBE2Q1Q7Z7E8 422 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 IRGQQ8WZA9 623 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 BADQ92934 168 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 NT5C3BQ969T7 300 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 GPATCH2LQ9NWQ4 482 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 ZBBXA8MT70 800 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 H7C0C1 242 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 ZBED1O96006 694 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 PECAM1P16284 738 aaPredicted RBP17.5■□□□□ 0.39
LDLR-206ENST00000557958 L1CAMP32004 1257 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 CHKAP35790 457 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 ATP5OP48047 213 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 NR2C2P49116 596 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 DAOAP59103 153 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 YWHAHQ04917 246 aaPredicted RBP17.5■□□□□ 0.39
LDLR-206ENST00000557958 DSC1Q08554 894 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 EMC10Q5UCC4 262 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 PPIL6Q8IXY8 311 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 COLGALT2Q8IYK4 626 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 PLD5Q8N7P1 536 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 PGM2Q96G03 612 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 TTC25Q96NG3 672 aa17.5■□□□□ 0.39
LDLR-206ENST00000557958 NPY6RQ99463 290 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms