RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 PTPN20Q4JDL3 420 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 CPA6Q8N4T0 437 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 RNF139Q8WU17 664 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 FAM3CQ92520 227 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 BAP1Q92560 729 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 FAM149B1Q96BN6 582 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 C8orf33Q9H7E9 229 aaPredicted RBP13.99□□□□□ -0.17
VPS28-210ENST00000529182 ECT2Q9H8V3 914 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 MARCH2Q9P0N8 246 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 SFMBT1Q9UHJ3 866 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 CEP83Q9Y592 693 aa13.99□□□□□ -0.17
VPS28-210ENST00000529182 E2F8A0AVK6 867 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 LRRC53A6NM62 1247 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 FAM170BA6NMN3 283 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 MSI1O43347 362 aaKnown RBP13.98□□□□□ -0.17
VPS28-210ENST00000529182 STC2O76061 302 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 CYP17A1P05093 508 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 GLULP15104 373 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 CDH5P33151 784 aaPredicted RBP13.98□□□□□ -0.17
VPS28-210ENST00000529182 CLCN5P51795 746 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 FMO1Q01740 532 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 CDR2Q01850 454 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 C2CD6Q53TS8 623 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 NAA35Q5VZE5 725 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 OR6B2Q6IFH4 312 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 ZNF852Q6ZMS4 543 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 FAM183BPQ6ZVS7 135 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 FMNL3Q8IVF7 1028 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 CCDC105Q8IYK2 499 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 ADGRG2Q8IZP9 1017 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 TMEM35BQ8NCS4 154 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 PJA1Q8NG27 643 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 CPA5Q8WXQ8 436 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 GOLGA1Q92805 767 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 ATP2A3Q93084 1043 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 NOX5Q96PH1 765 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 XPO4Q9C0E2 1151 aaKnown RBP13.98□□□□□ -0.17
VPS28-210ENST00000529182 TTYH3Q9C0H2 523 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 SYNCQ9H7C4 482 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 RAPGEFL1Q9UHV5 662 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 STRIP2Q9ULQ0 834 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 NAALADL1Q9UQQ1 740 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 SIT1Q9Y3P8 196 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 ZNF318Q5VUA4 2279 aa13.98□□□□□ -0.17
VPS28-210ENST00000529182 MAN2B1O00754 1011 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 SLC9A3R1O14745 358 aaPredicted RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 GRAP2O75791 330 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 NFATC1O95644 943 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 KLKB1P03952 638 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 NCAM1P13591 858 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 GJA4P35212 333 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 MLLT6P55198 1093 aaPredicted RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 NOMO3P69849 1222 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 GOLGA8FQ08AF8 430 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 GOLGA8DPQ0D2H9 430 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 PON2Q15165 354 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 DHCR24Q15392 516 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 SYPL2Q5VXT5 272 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 E4F1Q66K89 784 aaPredicted RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 RHBDF2Q6PJF5 856 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 Q6ZNB5 142 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 HTR3DQ70Z44 454 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 RALGPS2Q86X27 583 aaPredicted RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 ZNF677Q86XU0 584 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 ZNF687Q8N1G0 1237 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 ADAM32Q8TC27 787 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 DQX1Q8TE96 717 aaKnown RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 IPO4Q8TEX9 1081 aaKnown RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 PCDHB18PQ96TA0 734 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 OLA1Q9NTK5 396 aaKnown RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 TBC1D14Q9P2M4 693 aa13.97□□□□□ -0.17
VPS28-210ENST00000529182 LSM7Q9UK45 103 aaKnown RBP13.97□□□□□ -0.17
VPS28-210ENST00000529182 SART1O43290 800 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 LSM8O95777 96 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 CYP1A1P04798 512 aaPredicted RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 FERP16591 822 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 CORO1AP31146 461 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 PITX1P78337 314 aaPredicted RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 COG7P83436 770 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 FZD5Q13467 585 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 GAB4Q2WGN9 574 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 LY6G5CQ5SRR4 150 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 MSANTD2Q6P1R3 559 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 OLFML1Q6UWY5 402 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 IRF2BP2Q7Z5L9 587 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 ERICH1Q86X53 443 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 KIAA1958Q8N8K9 716 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 MSANTD3Q96H12 275 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 FBRSL1Q9HCM7 1045 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 RBM12Q9NTZ6 932 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 SEPT11Q9NVA2 429 aaKnown RBP13.96□□□□□ -0.17
VPS28-210ENST00000529182 DLGAP2Q9P1A6 1054 aa13.96□□□□□ -0.17
VPS28-210ENST00000529182 KMT2EQ8IZD2 1858 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 CAPN9O14815 690 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 GABRB2P47870 512 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 YWHAZP63104 245 aaKnown RBP13.95□□□□□ -0.18
VPS28-210ENST00000529182 SLC6A3Q01959 620 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 NR1H3Q13133 447 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 ASIC2Q16515 512 aa13.95□□□□□ -0.18
VPS28-210ENST00000529182 TPGS1Q6ZTW0 290 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms