RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RSPO2Q6UXX9 243 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 C4orf50Q6ZRC1 276 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 TAS1R1Q7RTX1 841 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 VSIG1Q86XK7 387 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 CEP57Q86XR8 500 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 MAP7D3Q8IWC1 876 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 SCML4Q8N228 414 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 SNF8Q96H20 258 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 ZNF670Q9BS34 389 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 COLEC11Q9BWP8 271 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 MRPL9Q9BYD2 267 aaKnown RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 DHX35Q9H5Z1 703 aaKnown RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 WDR6Q9NNW5 1121 aaKnown RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 ANLNQ9NQW6 1124 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 AAASQ9NRG9 546 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 ABI2Q9NYB9 513 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 COX16Q9P0S2 106 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 FZD10Q9ULW2 581 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 STAP1Q9ULZ2 295 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 NCAM1P13591 858 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 GBP1P32455 592 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 RDXP35241 583 aaKnown RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 SLC5A3P53794 718 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 FAM193AP78312 1265 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 LMNB2Q03252 620 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 CTXN3Q4LDR2 81 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 RTP2Q5QGT7 225 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 UBAP2Q5T6F2 1119 aaKnown RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ALS2CLQ60I27 953 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 SLC9A4Q6AI14 798 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 CNKSR3Q6P9H4 555 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ZNF365Q70YC5 407 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 GSTA5Q7RTV2 222 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 LRRC43Q8N309 656 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TTC9BQ8N6N2 239 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ANKLE1Q8NAG6 615 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TTC13Q8NBP0 860 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 STKLD1Q8NE28 680 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 SLC7A14Q8TBB6 771 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 IRGQQ8WZA9 623 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 EDEM1Q92611 657 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TMEM175Q9BSA9 504 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ADAM7Q9H2U9 754 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 EPB41L4BQ9H329 900 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 C11orf49Q9H6J7 331 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 PLXNA3P51805 1871 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TRIM43BA6NCK2 446 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ZNF487B1APH4 448 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 H0YGN5 161 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TBC1D4O60343 1298 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 DGKIO75912 1065 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 EFEMP2O95967 443 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ATF2P15336 505 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 GRIK1P39086 918 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ADCY8P40145 1251 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 GPR15P49685 360 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ITGA8P53708 1063 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 C1QTNF8P60827 252 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 NME3Q13232 169 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 IKBKEQ14164 716 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TFDP2Q14188 446 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 NOMO1Q15155 1222 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 BSPRYQ5W0U4 402 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 B4GALNT4Q76KP1 1039 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 DCP1BQ8IZD4 617 aaKnown RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 TRIM43Q96BQ3 446 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 LRRC45Q96CN5 670 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 PGLYRP2Q96PD5 576 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 SH3GL2Q99962 352 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 MAK16Q9BXY0 300 aaKnown RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 FRMD8P1Q9BZ68 369 aaPredicted RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ACBD3Q9H3P7 528 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 CWH43Q9H720 699 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 CWC15Q9P013 229 aaKnown RBP14.34□□□□□ -0.11
PTPRF-202ENST00000372405 ATP8A1Q9Y2Q0 1164 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 NFS1Q9Y697 457 aa14.34□□□□□ -0.11
PTPRF-202ENST00000372405 SF3B1O75533 1304 aaKnown RBP eCLIP14.34□□□□□ -0.118e-8■■■■■ 126.3
PTPRF-202ENST00000372405 LAMA2P24043 3122 aaKnown RBP14.33□□□□□ -0.11
PTPRF-202ENST00000372405 GREB1Q4ZG55 1949 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 CAPN9O14815 690 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 VNN2O95498 520 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 ITIH2P19823 946 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 LBX1P52954 281 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 EIF3EP60228 445 aaKnown RBP14.33□□□□□ -0.12
PTPRF-202ENST00000372405 DEUP1Q05D60 604 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 CALCOCO2Q13137 446 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 SDHAF4Q5VUM1 108 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 C1orf228Q6PIY5 440 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 TMCO2Q7Z6W1 182 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-202ENST00000372405 UNC45BQ8IWX7 931 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 CCDC89Q8N998 374 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 PGAP3Q96FM1 320 aaPredicted RBP14.33□□□□□ -0.12
PTPRF-202ENST00000372405 CSPG4P5Q96PW8 444 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 PTPRSQ13332 1948 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 SGK1O00141 431 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 RBP3P10745 1247 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 GOT1P17174 413 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 CHKAP35790 457 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 NRLP54845 237 aa14.33□□□□□ -0.12
PTPRF-202ENST00000372405 P3H1Q32P28 736 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms